Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:103666298..103670296-chr8:103678043..103682174,5	K562	blood:
2	chr8:103676174..103681192-chr8:103681793..103685346,6	K562	blood:
3	chr8:103676656..103679236-chr8:103715364..103718387,3	MCF-7	breast:
4	chr8:103677991..103679955-chr8:103687094..103689017,2	K562	blood:

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10505034	0.89[YRI][hapmap]
rs1991933	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053127	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2436934	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436941	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511715	1.00[EUR][1000 genomes]
rs2511716	1.00[EUR][1000 genomes]
rs2511717	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2511720	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2511721	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2511723	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511725	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511726	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511727	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511728	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511729	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511752	1.00[JPT][hapmap]
rs919949	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103670800-103678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:103671000-103678600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:103674600-103679000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:103675400-103678800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:103675400-103679000	Weak transcription	Hela-S3	cervix
6	chr8:103675400-103682600	Weak transcription	Right Ventricle	heart
7	chr8:103675400-103698200	Weak transcription	Osteobl	bone
8	chr8:103675600-103679800	Weak transcription	K562	blood
9	chr8:103675600-103692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:103675800-103688200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:103676000-103678600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:103677000-103679000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:103678000-103678800	Enhancers	Duodenum Mucosa	Duodenum
14	chr8:103678200-103679200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr8:103678200-103679400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:103678400-103678600	Enhancers	Fetal Intestine Large	intestine
17	chr8:103678400-103679200	Enhancers	Placenta	Placenta
18	chr8:103678400-103679800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:103678400-103680000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr8:103678400-103680000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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