Variant report

Variant	rs919949
Chromosome Location	chr8:103687352-103687353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103668401..103671307-chr8:103686739..103688259,2	K562	blood:
2	chr8:103686012..103689687-chr8:103690179..103693773,3	K562	blood:
3	chr8:103677991..103679955-chr8:103687094..103689017,2	K562	blood:
4	chr8:103663541..103666840-chr8:103686642..103688438,3	K562	blood:
5	chr8:103687333..103690128-chr8:103818672..103821393,3	MCF-7	breast:
6	chr8:103685320..103687601-chr8:103824091..103826034,2	MCF-7	breast:
7	chr8:103672001..103675090-chr8:103685328..103688454,3	K562	blood:
8	chr8:103664800..103666840-chr8:103686767..103688438,2	K562	blood:
9	chr8:103683074..103685315-chr8:103686786..103688306,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17775215	1.00[CHB][hapmap]
rs1991933	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053127	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2436934	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436935	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436939	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436941	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511715	0.92[EUR][1000 genomes]
rs2511716	0.92[EUR][1000 genomes]
rs2511717	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2511720	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2511721	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2511723	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511725	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511726	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511727	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511728	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511729	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511752	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103675400-103698200	Weak transcription	Osteobl	bone
2	chr8:103675600-103692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:103675800-103688200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:103679400-103689400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:103679800-103706400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:103686400-103688200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:103687000-103688400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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