Variant report

Variant rs2439535
Chromosome Location chr6:13305822-13305823
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:13288600-13321000 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr6:13288600-13326400 Strong transcription Primary T cells from cord blood blood
3 chr6:13289800-13327000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr6:13290400-13310400 Strong transcription Dnd41 blood
5 chr6:13291200-13310400 Strong transcription Primary T helper naive cells fromperipheralblood blood
6 chr6:13291800-13320400 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr6:13292000-13326000 Strong transcription Breast Myoepithelial Primary Cells Breast
8 chr6:13292600-13326600 Strong transcription HUES64 Cell Line embryonic stem cell
9 chr6:13298000-13309600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr6:13298200-13326800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr6:13299600-13306400 Strong transcription H9 Cell Line embryonic stem cell
12 chr6:13299600-13326600 Strong transcription HUES6 Cell Line embryonic stem cell
13 chr6:13299800-13326400 Strong transcription iPS-20b Cell Line embryonic stem cell
14 chr6:13300000-13306400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr6:13300200-13309200 Strong transcription H1 Cell Line embryonic stem cell
16 chr6:13300200-13311800 Strong transcription Primary T helper cells PMA-I stimulated --
17 chr6:13300200-13327000 Strong transcription HUES48 Cell Line embryonic stem cell
18 chr6:13301000-13306400 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr6:13301200-13325400 Strong transcription iPS-18 Cell Line embryonic stem cell
20 chr6:13301800-13307600 Weak transcription Gastric stomach
21 chr6:13302400-13306400 Enhancers Primary B cells from peripheral blood blood
22 chr6:13302800-13307200 Weak transcription Brain Germinal Matrix brain
23 chr6:13303400-13307600 Genic enhancers A549 lung
24 chr6:13303400-13309600 Strong transcription Fetal Thymus thymus
25 chr6:13303400-13315200 Weak transcription Small Intestine intestine
26 chr6:13303400-13315800 Weak transcription Placenta Amnion Placenta Amnion
27 chr6:13303600-13308400 Weak transcription Fetal Kidney kidney
28 chr6:13303800-13306200 Enhancers Cortex derived primary cultured neurospheres brain
29 chr6:13303800-13306200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
30 chr6:13303800-13308400 Strong transcription Liver Liver
31 chr6:13303800-13309800 Strong transcription Fetal Intestine Large intestine
32 chr6:13303800-13315800 Weak transcription HMEC breast
33 chr6:13303800-13327800 Weak transcription Stomach Mucosa stomach
34 chr6:13304000-13306400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr6:13304000-13308000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr6:13304200-13306400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr6:13304200-13308000 Strong transcription HSMM muscle
38 chr6:13304200-13312000 Strong transcription Primary T helper cells fromperipheralblood blood
39 chr6:13304200-13315000 Weak transcription Hela-S3 cervix
40 chr6:13304200-13315200 Weak transcription Aorta Aorta
41 chr6:13304400-13306000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr6:13304400-13308000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr6:13304400-13309600 Strong transcription Primary T regulatory cells fromperipheralblood blood
44 chr6:13304400-13316800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
45 chr6:13304400-13327800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
46 chr6:13304600-13307400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr6:13304600-13307600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr6:13304600-13309000 Strong transcription HepG2 liver
49 chr6:13304600-13309200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
50 chr6:13304600-13325600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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