Variant report

Variant rs2439542
Chromosome Location chr6:13311823-13311824
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:13288600-13321000 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr6:13288600-13326400 Strong transcription Primary T cells from cord blood blood
3 chr6:13289800-13327000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr6:13291800-13320400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr6:13292000-13326000 Strong transcription Breast Myoepithelial Primary Cells Breast
6 chr6:13292600-13326600 Strong transcription HUES64 Cell Line embryonic stem cell
7 chr6:13298200-13326800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr6:13299600-13326600 Strong transcription HUES6 Cell Line embryonic stem cell
9 chr6:13299800-13326400 Strong transcription iPS-20b Cell Line embryonic stem cell
10 chr6:13300200-13327000 Strong transcription HUES48 Cell Line embryonic stem cell
11 chr6:13301200-13325400 Strong transcription iPS-18 Cell Line embryonic stem cell
12 chr6:13303400-13315200 Weak transcription Small Intestine intestine
13 chr6:13303400-13315800 Weak transcription Placenta Amnion Placenta Amnion
14 chr6:13303800-13315800 Weak transcription HMEC breast
15 chr6:13303800-13327800 Weak transcription Stomach Mucosa stomach
16 chr6:13304200-13312000 Strong transcription Primary T helper cells fromperipheralblood blood
17 chr6:13304200-13315000 Weak transcription Hela-S3 cervix
18 chr6:13304200-13315200 Weak transcription Aorta Aorta
19 chr6:13304400-13316800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr6:13304400-13327800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr6:13304600-13325600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr6:13304600-13326200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr6:13304800-13315200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr6:13304800-13315800 Weak transcription Colonic Mucosa Colon
25 chr6:13304800-13315800 Weak transcription Colon Smooth Muscle Colon
26 chr6:13305200-13316400 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr6:13305200-13325800 Strong transcription Duodenum Mucosa Duodenum
28 chr6:13305400-13315800 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr6:13305400-13315800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr6:13305400-13326200 Strong transcription Primary T cells fromperipheralblood blood
31 chr6:13305600-13313800 Weak transcription HSMMtube muscle
32 chr6:13305600-13315200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr6:13305800-13313800 Weak transcription Brain Anterior Caudate brain
34 chr6:13305800-13313800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr6:13305800-13314800 Weak transcription Esophagus oesophagus
36 chr6:13305800-13315000 Weak transcription NHLF lung
37 chr6:13305800-13315200 Weak transcription Lung lung
38 chr6:13305800-13315200 Weak transcription Pancreas Pancrea
39 chr6:13305800-13315400 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr6:13305800-13315800 Weak transcription Brain Cingulate Gyrus brain
41 chr6:13305800-13316000 Weak transcription Brain Angular Gyrus brain
42 chr6:13305800-13319000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
43 chr6:13305800-13326200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
44 chr6:13306200-13313400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr6:13306400-13314400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr6:13307000-13312000 Strong transcription NH-A brain
47 chr6:13307200-13326200 Strong transcription Primary B cells from peripheral blood blood
48 chr6:13307400-13326400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr6:13307800-13314400 Weak transcription Brain Hippocampus Middle brain
50 chr6:13308000-13313600 Weak transcription Stomach Smooth Muscle stomach

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