Variant report

Variant	rs2441836
Chromosome Location	chr8:105299180-105299181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1374519	0.83[AFR][1000 genomes]
rs1374526	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1447064	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1447075	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1470522	0.83[AFR][1000 genomes]
rs1533243	0.83[AMR][1000 genomes]
rs1838933	0.89[EUR][1000 genomes]
rs1868012	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1966072	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2044532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2121553	0.81[AFR][1000 genomes]
rs2166641	0.83[AFR][1000 genomes]
rs2166643	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2166645	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2245311	0.85[AMR][1000 genomes]
rs2441837	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2441864	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2441867	0.94[AMR][1000 genomes]
rs2458421	0.94[AMR][1000 genomes]
rs2511600	0.83[AFR][1000 genomes]
rs2511607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2511608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2511611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2511628	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2511629	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2514654	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2514655	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3440633	chr8:105297684-105304611	Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3450089	chr8:105297923-105305073	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105297400-105305800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:105298400-105299400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
3	chr8:105298800-105299200	Active TSS	ES-I3 Cell Line	embryonic stem cell

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