Variant report

Variant	rs2441864
Chromosome Location	chr8:105330622-105330623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10098676	1.00[ASN][1000 genomes]
rs10110136	1.00[ASN][1000 genomes]
rs13252000	1.00[ASN][1000 genomes]
rs13254398	1.00[ASN][1000 genomes]
rs13254492	1.00[ASN][1000 genomes]
rs13255005	1.00[ASN][1000 genomes]
rs13257022	1.00[ASN][1000 genomes]
rs13263278	1.00[ASN][1000 genomes]
rs13266788	1.00[ASN][1000 genomes]
rs13268935	1.00[ASN][1000 genomes]
rs13273838	1.00[ASN][1000 genomes]
rs13274374	1.00[ASN][1000 genomes]
rs13281700	1.00[ASN][1000 genomes]
rs1374519	0.83[AFR][1000 genomes]
rs1374520	1.00[ASN][1000 genomes]
rs1374521	1.00[ASN][1000 genomes]
rs1374526	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447064	1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1447074	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447075	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1447078	1.00[ASN][1000 genomes]
rs1470522	0.83[AFR][1000 genomes]
rs1530598	1.00[ASN][1000 genomes]
rs1533243	0.89[AMR][1000 genomes]
rs1868011	1.00[ASN][1000 genomes]
rs1868012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1966072	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2001366	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044532	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2121553	0.81[AFR][1000 genomes]
rs2166641	0.83[AFR][1000 genomes]
rs2166642	1.00[ASN][1000 genomes]
rs2166643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2166645	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245311	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2262596	1.00[ASN][1000 genomes]
rs2264167	1.00[ASN][1000 genomes]
rs2441833	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441836	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2441837	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2441841	1.00[ASN][1000 genomes]
rs2441847	1.00[ASN][1000 genomes]
rs2441849	1.00[ASN][1000 genomes]
rs2441852	1.00[ASN][1000 genomes]
rs2441857	1.00[ASN][1000 genomes]
rs2441858	1.00[ASN][1000 genomes]
rs2441867	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441888	1.00[ASN][1000 genomes]
rs2441889	1.00[ASN][1000 genomes]
rs2441893	1.00[ASN][1000 genomes]
rs2441894	1.00[ASN][1000 genomes]
rs2458420	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458421	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2511600	0.83[AFR][1000 genomes]
rs2511607	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2511608	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2511610	1.00[ASN][1000 genomes]
rs2511611	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2511617	1.00[ASN][1000 genomes]
rs2511618	1.00[ASN][1000 genomes]
rs2511620	1.00[ASN][1000 genomes]
rs2511624	1.00[ASN][1000 genomes]
rs2511627	1.00[ASN][1000 genomes]
rs2511628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2511629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2514654	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514655	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514660	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34576696	1.00[ASN][1000 genomes]
rs34829634	1.00[ASN][1000 genomes]
rs34868523	1.00[ASN][1000 genomes]
rs35468699	1.00[ASN][1000 genomes]
rs35595789	1.00[ASN][1000 genomes]
rs35635989	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36090760	1.00[ASN][1000 genomes]
rs66921003	1.00[ASN][1000 genomes]
rs71520872	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105328600-105331000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:105328800-105337800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:105329200-105330800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:105329400-105335600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:105329800-105331200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:105330000-105331200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:105330000-105332000	Weak transcription	Fetal Thymus	thymus
8	chr8:105330600-105335400	Weak transcription	Stomach Smooth Muscle	stomach

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