Variant report

Variant	rs13255005
Chromosome Location	chr8:105298715-105298716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10098676	1.00[ASN][1000 genomes]
rs10110136	1.00[ASN][1000 genomes]
rs13252000	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13254398	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13254492	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13257022	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13263278	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13266788	1.00[ASN][1000 genomes]
rs13268935	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13273838	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13274374	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13281700	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1374520	1.00[ASN][1000 genomes]
rs1374521	1.00[ASN][1000 genomes]
rs1374526	1.00[ASN][1000 genomes]
rs1447074	1.00[ASN][1000 genomes]
rs1447078	1.00[ASN][1000 genomes]
rs1530598	1.00[ASN][1000 genomes]
rs1868011	1.00[ASN][1000 genomes]
rs2001366	1.00[ASN][1000 genomes]
rs2166642	1.00[ASN][1000 genomes]
rs2166645	1.00[ASN][1000 genomes]
rs2262596	1.00[ASN][1000 genomes]
rs2264167	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2441833	1.00[ASN][1000 genomes]
rs2441841	1.00[ASN][1000 genomes]
rs2441847	1.00[ASN][1000 genomes]
rs2441849	1.00[ASN][1000 genomes]
rs2441852	1.00[ASN][1000 genomes]
rs2441857	1.00[ASN][1000 genomes]
rs2441858	1.00[ASN][1000 genomes]
rs2441864	1.00[ASN][1000 genomes]
rs2441867	1.00[ASN][1000 genomes]
rs2441888	1.00[ASN][1000 genomes]
rs2441889	1.00[ASN][1000 genomes]
rs2441893	1.00[ASN][1000 genomes]
rs2441894	1.00[ASN][1000 genomes]
rs2458420	1.00[ASN][1000 genomes]
rs2511610	1.00[ASN][1000 genomes]
rs2511617	1.00[ASN][1000 genomes]
rs2511618	1.00[ASN][1000 genomes]
rs2511620	1.00[ASN][1000 genomes]
rs2511624	1.00[ASN][1000 genomes]
rs2511627	1.00[ASN][1000 genomes]
rs2514654	1.00[ASN][1000 genomes]
rs2514655	1.00[ASN][1000 genomes]
rs2514660	1.00[ASN][1000 genomes]
rs28767518	0.82[AFR][1000 genomes]
rs34576696	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34829634	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34868523	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35468699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35595789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35635989	1.00[ASN][1000 genomes]
rs36090760	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66921003	1.00[ASN][1000 genomes]
rs71520872	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3440633	chr8:105297684-105304611	Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3450089	chr8:105297923-105305073	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105297000-105298800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:105297400-105305800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:105298400-105299400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell

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