Variant report

Variant	rs34868523
Chromosome Location	chr2:12767220-12767221
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10098676	1.00[ASN][1000 genomes]
rs10110136	1.00[ASN][1000 genomes]
rs13252000	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254398	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254492	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255005	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13257022	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263278	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266788	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268935	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273838	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274374	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281700	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374520	1.00[ASN][1000 genomes]
rs1374521	1.00[ASN][1000 genomes]
rs1374526	1.00[ASN][1000 genomes]
rs1447074	1.00[ASN][1000 genomes]
rs1447078	1.00[ASN][1000 genomes]
rs1530598	1.00[ASN][1000 genomes]
rs1868011	1.00[ASN][1000 genomes]
rs2001366	1.00[ASN][1000 genomes]
rs2166642	1.00[ASN][1000 genomes]
rs2166645	1.00[ASN][1000 genomes]
rs2262596	1.00[ASN][1000 genomes]
rs2264167	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441833	1.00[ASN][1000 genomes]
rs2441841	1.00[ASN][1000 genomes]
rs2441847	1.00[ASN][1000 genomes]
rs2441849	1.00[ASN][1000 genomes]
rs2441852	1.00[ASN][1000 genomes]
rs2441857	1.00[ASN][1000 genomes]
rs2441858	1.00[ASN][1000 genomes]
rs2441864	1.00[ASN][1000 genomes]
rs2441867	1.00[ASN][1000 genomes]
rs2441888	1.00[ASN][1000 genomes]
rs2441889	1.00[ASN][1000 genomes]
rs2441893	1.00[ASN][1000 genomes]
rs2441894	1.00[ASN][1000 genomes]
rs2458420	1.00[ASN][1000 genomes]
rs2511610	1.00[ASN][1000 genomes]
rs2511617	1.00[ASN][1000 genomes]
rs2511618	1.00[ASN][1000 genomes]
rs2511620	1.00[ASN][1000 genomes]
rs2511624	1.00[ASN][1000 genomes]
rs2511627	1.00[ASN][1000 genomes]
rs2514654	1.00[ASN][1000 genomes]
rs2514655	1.00[ASN][1000 genomes]
rs2514660	1.00[ASN][1000 genomes]
rs34576696	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34829634	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35468699	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35595789	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35635989	1.00[ASN][1000 genomes]
rs36090760	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66921003	1.00[ASN][1000 genomes]
rs71520872	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760581	chr2:12515713-12827258	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv581000	chr2:12540865-12840575	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12761000-12768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:12766200-12768800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:12766200-12770200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:12766200-12772400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:12766400-12769600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr2:12767000-12767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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