Variant report

Variant	rs13254492
Chromosome Location	chr8:105306867-105306868
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105292474..105294949-chr8:105304192..105307162,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10098676	1.00[ASN][1000 genomes]
rs10110136	1.00[ASN][1000 genomes]
rs13252000	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254398	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255005	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13257022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263278	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273838	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274374	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374520	1.00[ASN][1000 genomes]
rs1374521	1.00[ASN][1000 genomes]
rs1374526	1.00[ASN][1000 genomes]
rs1447074	1.00[ASN][1000 genomes]
rs1447078	1.00[ASN][1000 genomes]
rs1530598	1.00[ASN][1000 genomes]
rs1868011	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2001366	1.00[ASN][1000 genomes]
rs2166642	1.00[ASN][1000 genomes]
rs2166645	1.00[ASN][1000 genomes]
rs2262596	1.00[ASN][1000 genomes]
rs2264167	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441833	1.00[ASN][1000 genomes]
rs2441841	1.00[ASN][1000 genomes]
rs2441847	1.00[ASN][1000 genomes]
rs2441849	1.00[ASN][1000 genomes]
rs2441852	1.00[ASN][1000 genomes]
rs2441857	1.00[ASN][1000 genomes]
rs2441858	1.00[ASN][1000 genomes]
rs2441864	1.00[ASN][1000 genomes]
rs2441867	1.00[ASN][1000 genomes]
rs2441888	1.00[ASN][1000 genomes]
rs2441889	1.00[ASN][1000 genomes]
rs2441893	1.00[ASN][1000 genomes]
rs2441894	1.00[ASN][1000 genomes]
rs2458420	1.00[ASN][1000 genomes]
rs2511610	1.00[ASN][1000 genomes]
rs2511617	1.00[ASN][1000 genomes]
rs2511618	1.00[ASN][1000 genomes]
rs2511620	1.00[ASN][1000 genomes]
rs2511624	1.00[ASN][1000 genomes]
rs2511627	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2514654	1.00[ASN][1000 genomes]
rs2514655	1.00[ASN][1000 genomes]
rs2514660	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34576696	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34829634	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34868523	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35468699	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35595789	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35635989	1.00[ASN][1000 genomes]
rs36090760	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66921003	1.00[ASN][1000 genomes]
rs71520872	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105306000-105307000	Enhancers	GM12878-XiMat	blood
2	chr8:105306400-105312200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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