Variant report

Variant	rs13281700
Chromosome Location	chr8:105306553-105306554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105292474..105294949-chr8:105304192..105307162,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10098676	1.00[ASN][1000 genomes]
rs10110136	1.00[ASN][1000 genomes]
rs13252000	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254398	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255005	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13257022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263278	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273838	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274374	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374520	1.00[ASN][1000 genomes]
rs1374521	1.00[ASN][1000 genomes]
rs1374526	1.00[ASN][1000 genomes]
rs1447074	1.00[ASN][1000 genomes]
rs1447078	1.00[ASN][1000 genomes]
rs1530598	1.00[ASN][1000 genomes]
rs1868011	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2001366	1.00[ASN][1000 genomes]
rs2166642	1.00[ASN][1000 genomes]
rs2166645	1.00[ASN][1000 genomes]
rs2262596	1.00[ASN][1000 genomes]
rs2264167	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441833	1.00[ASN][1000 genomes]
rs2441841	1.00[ASN][1000 genomes]
rs2441847	1.00[ASN][1000 genomes]
rs2441849	1.00[ASN][1000 genomes]
rs2441852	1.00[ASN][1000 genomes]
rs2441857	1.00[ASN][1000 genomes]
rs2441858	1.00[ASN][1000 genomes]
rs2441864	1.00[ASN][1000 genomes]
rs2441867	1.00[ASN][1000 genomes]
rs2441888	1.00[ASN][1000 genomes]
rs2441889	1.00[ASN][1000 genomes]
rs2441893	1.00[ASN][1000 genomes]
rs2441894	1.00[ASN][1000 genomes]
rs2458420	1.00[ASN][1000 genomes]
rs2511610	1.00[ASN][1000 genomes]
rs2511617	1.00[ASN][1000 genomes]
rs2511618	1.00[ASN][1000 genomes]
rs2511620	1.00[ASN][1000 genomes]
rs2511624	1.00[ASN][1000 genomes]
rs2511627	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2514654	1.00[ASN][1000 genomes]
rs2514655	1.00[ASN][1000 genomes]
rs2514660	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34576696	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34829634	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34868523	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35468699	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35595789	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35635989	1.00[ASN][1000 genomes]
rs36090760	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66921003	1.00[ASN][1000 genomes]
rs71520872	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105305400-105306800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:105305600-105306600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:105305600-105306800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:105305600-105306800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:105305800-105306600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:105305800-105306600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:105305800-105306800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:105305800-105306800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:105306000-105307000	Enhancers	GM12878-XiMat	blood
10	chr8:105306200-105306600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:105306200-105306600	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr8:105306200-105306600	Enhancers	Fetal Brain Male	brain
13	chr8:105306200-105306600	Enhancers	Fetal Brain Female	brain
14	chr8:105306200-105306800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:105306200-105306800	Enhancers	Brain Germinal Matrix	brain
16	chr8:105306400-105306800	Active TSS	Brain Hippocampus Middle	brain
17	chr8:105306400-105312200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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