Variant report

Variant	rs2441924
Chromosome Location	chr15:57561100-57561101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11071310	0.83[ASN][1000 genomes]
rs12324235	0.83[ASN][1000 genomes]
rs17239459	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17820018	0.83[ASN][1000 genomes]
rs17820095	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1867638	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2248620	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2290939	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2431032	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2440972	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440974	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2591062	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2591066	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593217	0.82[EUR][1000 genomes]
rs2593221	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2593223	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2593233	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2593234	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2593236	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2615228	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703599	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2703600	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2733304	0.83[ASN][1000 genomes]
rs2733309	0.83[ASN][1000 genomes]
rs2733318	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2733320	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2733329	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733330	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2921430	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4378569	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4774920	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6493909	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167268	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7180513	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7182038	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182188	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72731986	0.81[ASN][1000 genomes]
rs8024830	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8027348	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8037987	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8042322	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8043103	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs935328	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57511800-57565000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:57520400-57576000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:57522400-57565400	Weak transcription	Spleen	Spleen
4	chr15:57522800-57585000	Strong transcription	Fetal Thymus	thymus
5	chr15:57526600-57574200	Weak transcription	Hela-S3	cervix
6	chr15:57533600-57568800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:57536800-57574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:57537800-57598200	Weak transcription	Colonic Mucosa	Colon
9	chr15:57538400-57564800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:57539400-57574800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:57539600-57565200	Weak transcription	Aorta	Aorta
12	chr15:57539600-57565200	Weak transcription	Esophagus	oesophagus
13	chr15:57540600-57565400	Weak transcription	Ovary	ovary
14	chr15:57543200-57565200	Weak transcription	Right Ventricle	heart
15	chr15:57544600-57574800	Weak transcription	Fetal Brain Male	brain
16	chr15:57545800-57565200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:57546000-57580600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:57548200-57578000	Weak transcription	Fetal Heart	heart
19	chr15:57552000-57565200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:57552000-57565800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:57552200-57565200	Weak transcription	Psoas Muscle	Psoas
22	chr15:57552200-57565200	Weak transcription	Small Intestine	intestine
23	chr15:57552200-57573200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:57552200-57588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:57552400-57565600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:57552400-57578600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:57553200-57585000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:57553800-57561200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:57553800-57563400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:57554200-57568800	Strong transcription	Primary T cells from cord blood	blood
31	chr15:57555000-57564200	Weak transcription	Brain Angular Gyrus	brain
32	chr15:57555400-57565400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:57556000-57564800	Weak transcription	A549	lung
34	chr15:57556000-57565200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:57556000-57565200	Weak transcription	NHEK	skin
36	chr15:57556000-57565400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:57556200-57563600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:57556200-57564400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:57556200-57564800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr15:57556200-57564800	Weak transcription	NHDF-Ad	bronchial
41	chr15:57556200-57565200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:57556200-57565200	Weak transcription	HMEC	breast
43	chr15:57556200-57565400	Weak transcription	Fetal Brain Female	brain
44	chr15:57556200-57580600	Weak transcription	Stomach Mucosa	stomach
45	chr15:57556400-57565200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr15:57557000-57565200	Weak transcription	HUVEC	blood vessel
47	chr15:57557000-57584600	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:57557200-57564200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr15:57557200-57564800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:57557200-57564800	Weak transcription	Stomach Smooth Muscle	stomach

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