Variant report

Variant	rs7182038
Chromosome Location	chr15:57555523-57555524
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57549292..57551401-chr15:57555481..57557548,2	K562	blood:
2	chr15:57548444..57552670-chr15:57553195..57556981,4	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11071307	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11071310	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11636655	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12324235	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12593843	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12595074	0.81[GIH][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs1545728	0.82[YRI][hapmap]
rs16977374	0.91[YRI][hapmap]
rs17239222	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs17239459	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17819940	0.95[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs17820018	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17820095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1867638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1870870	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2126402	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2169468	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2248620	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2252289	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs2290939	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2431032	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2440972	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440974	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2441924	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464427	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs2464428	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2591062	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2591066	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593217	0.95[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs2593221	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2593223	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2593228	0.82[YRI][hapmap]
rs2593233	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2593234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2593236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2615220	0.82[YRI][hapmap]
rs2615228	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703588	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2703599	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2703600	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2733187	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs2733304	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2733309	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2733318	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2733320	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2733329	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733330	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2920270	0.95[CEU][hapmap]
rs2921430	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2951902	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2957578	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs2957592	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2962988	0.93[JPT][hapmap]
rs2962995	0.95[CEU][hapmap];0.89[CHB][hapmap]
rs3095821	0.82[YRI][hapmap]
rs3794617	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4378569	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4774920	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56151428	0.82[EUR][1000 genomes]
rs6493909	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.93[LWK][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7165729	0.81[EUR][1000 genomes]
rs7167268	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7180513	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7182188	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72731974	0.82[EUR][1000 genomes]
rs72731986	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs734033	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs8024830	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8024901	0.91[YRI][hapmap]
rs8027348	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8035097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8037987	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8042190	0.95[CEU][hapmap]
rs8042322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8043103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs935328	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv457164	chr15:57495060-57559387	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv569578	chr15:57495060-57559387	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57511800-57565000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:57520400-57576000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:57522400-57565400	Weak transcription	Spleen	Spleen
4	chr15:57522800-57585000	Strong transcription	Fetal Thymus	thymus
5	chr15:57525600-57556800	Weak transcription	Pancreas	Pancrea
6	chr15:57526600-57574200	Weak transcription	Hela-S3	cervix
7	chr15:57533600-57568800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr15:57536800-57574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:57537800-57598200	Weak transcription	Colonic Mucosa	Colon
10	chr15:57538400-57564800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:57539400-57574800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:57539600-57556800	Weak transcription	Gastric	stomach
13	chr15:57539600-57565200	Weak transcription	Aorta	Aorta
14	chr15:57539600-57565200	Weak transcription	Esophagus	oesophagus
15	chr15:57540600-57556800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:57540600-57557000	Weak transcription	Lung	lung
17	chr15:57540600-57565400	Weak transcription	Ovary	ovary
18	chr15:57543000-57556400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:57543200-57565200	Weak transcription	Right Ventricle	heart
20	chr15:57544600-57574800	Weak transcription	Fetal Brain Male	brain
21	chr15:57545800-57565200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:57546000-57580600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:57548200-57556400	Weak transcription	Fetal Stomach	stomach
24	chr15:57548200-57578000	Weak transcription	Fetal Heart	heart
25	chr15:57550400-57556600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:57550400-57560400	Strong transcription	Dnd41	blood
27	chr15:57552000-57565200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:57552000-57565800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr15:57552200-57556600	Weak transcription	Fetal Intestine Small	intestine
30	chr15:57552200-57560000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:57552200-57565200	Weak transcription	Psoas Muscle	Psoas
32	chr15:57552200-57565200	Weak transcription	Small Intestine	intestine
33	chr15:57552200-57573200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:57552200-57588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr15:57552400-57565600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr15:57552400-57578600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:57552800-57560200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:57553000-57560800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:57553200-57560400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:57553200-57585000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:57553600-57558600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:57553600-57560800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:57553800-57557600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr15:57553800-57558200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr15:57553800-57560400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr15:57553800-57560400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr15:57553800-57561200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:57553800-57563400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:57554000-57556200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:57554000-57560800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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