Variant report

Variant	rs2442368
Chromosome Location	chr13:39284186-39284187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2442360	0.93[AFR][1000 genomes]
rs2442366	1.00[AFR][1000 genomes]
rs2442372	0.84[AFR][1000 genomes]
rs2442374	0.84[AFR][1000 genomes]
rs2496403	0.83[AFR][1000 genomes]
rs2496424	0.84[AFR][1000 genomes]
rs2496432	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39265800-39287200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:39268000-39284600	Weak transcription	Fetal Kidney	kidney
3	chr13:39276400-39286800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:39277200-39286800	Weak transcription	Fetal Lung	lung
5	chr13:39279200-39294600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:39282200-39293200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:39283400-39300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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