Variant report

Variant	rs2496424
Chromosome Location	chr13:39264597-39264598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2442331	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442332	1.00[EUR][1000 genomes]
rs2442333	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442334	1.00[EUR][1000 genomes]
rs2442336	1.00[EUR][1000 genomes]
rs2442345	1.00[EUR][1000 genomes]
rs2442346	1.00[EUR][1000 genomes]
rs2442360	1.00[EUR][1000 genomes]
rs2442366	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442368	0.84[AFR][1000 genomes]
rs2442371	1.00[EUR][1000 genomes]
rs2442372	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442374	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442376	1.00[EUR][1000 genomes]
rs2442378	1.00[EUR][1000 genomes]
rs2442380	1.00[EUR][1000 genomes]
rs2496398	1.00[EUR][1000 genomes]
rs2496403	1.00[EUR][1000 genomes]
rs2496411	1.00[EUR][1000 genomes]
rs2496413	1.00[EUR][1000 genomes]
rs2496414	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2496421	1.00[EUR][1000 genomes]
rs2496426	1.00[EUR][1000 genomes]
rs2496432	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2496447	1.00[EUR][1000 genomes]
rs2595557	1.00[EUR][1000 genomes]
rs2595559	1.00[EUR][1000 genomes]
rs2595562	1.00[EUR][1000 genomes]
rs2595567	1.00[EUR][1000 genomes]
rs2805082	1.00[EUR][1000 genomes]
rs2805083	1.00[EUR][1000 genomes]
rs2805084	1.00[EUR][1000 genomes]
rs2805085	1.00[EUR][1000 genomes]
rs2805089	1.00[EUR][1000 genomes]
rs7320346	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39262200-39267400	Weak transcription	Psoas Muscle	Psoas
2	chr13:39262600-39266600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:39262600-39267000	Weak transcription	Fetal Heart	heart
4	chr13:39262800-39264800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
5	chr13:39263000-39265000	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:39263200-39265800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:39263400-39265200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:39263400-39265400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:39263400-39268000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:39263600-39264600	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
11	chr13:39263600-39264800	Weak transcription	Fetal Lung	lung
12	chr13:39263600-39265200	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr13:39263600-39267600	Weak transcription	Fetal Kidney	kidney
14	chr13:39263600-39275400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr13:39263800-39265400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr13:39263800-39267400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:39263800-39275400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:39264000-39268400	Weak transcription	Fetal Intestine Small	intestine
19	chr13:39264000-39268800	Weak transcription	Fetal Intestine Large	intestine
20	chr13:39264000-39271000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr13:39264200-39264800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr13:39264200-39265800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:39264200-39266800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr13:39264200-39267400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr13:39264200-39267800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:39264200-39276800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr13:39264400-39264600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr13:39264400-39265800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr13:39264400-39271000	Weak transcription	Fetal Muscle Leg	muscle
30	chr13:39264400-39275800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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