Variant report
| Variant | rs2595557 |
|---|---|
| Chromosome Location | chr13:39206314-39206315 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:39191819..39194191-chr13:39204894..39206561,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234701 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs2442331 | 1.00[EUR][1000 genomes] |
| rs2442332 | 1.00[EUR][1000 genomes] |
| rs2442333 | 1.00[EUR][1000 genomes] |
| rs2442334 | 1.00[EUR][1000 genomes] |
| rs2442336 | 1.00[EUR][1000 genomes] |
| rs2442345 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2442346 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2442360 | 1.00[EUR][1000 genomes] |
| rs2442366 | 1.00[EUR][1000 genomes] |
| rs2442371 | 1.00[EUR][1000 genomes] |
| rs2442372 | 1.00[EUR][1000 genomes] |
| rs2442374 | 1.00[EUR][1000 genomes] |
| rs2442376 | 1.00[EUR][1000 genomes] |
| rs2442378 | 1.00[EUR][1000 genomes] |
| rs2442380 | 1.00[EUR][1000 genomes] |
| rs2496398 | 1.00[EUR][1000 genomes] |
| rs2496403 | 1.00[EUR][1000 genomes] |
| rs2496411 | 1.00[EUR][1000 genomes] |
| rs2496413 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2496414 | 1.00[EUR][1000 genomes] |
| rs2496421 | 1.00[EUR][1000 genomes] |
| rs2496424 | 1.00[EUR][1000 genomes] |
| rs2496426 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2496432 | 1.00[EUR][1000 genomes] |
| rs2496447 | 1.00[EUR][1000 genomes] |
| rs2595559 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2595562 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2595567 | 1.00[EUR][1000 genomes] |
| rs2805082 | 1.00[EUR][1000 genomes] |
| rs2805083 | 1.00[EUR][1000 genomes] |
| rs2805084 | 1.00[EUR][1000 genomes] |
| rs2805085 | 1.00[EUR][1000 genomes] |
| rs2805089 | 1.00[EUR][1000 genomes] |
| rs7320346 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832584 | chr13:39074265-39284724 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39205800-39211800 | Weak transcription | Fetal Lung | lung |
| 2 | chr13:39205800-39212400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
