Variant report

Variant	rs2442332
Chromosome Location	chr13:39244877-39244878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:39243748..39246515-chr13:39262271..39264131,2	MCF-7	breast:
2	chr13:39244482..39246478-chr13:39258303..39260583,2	MCF-7	breast:
3	chr13:39244540..39245431-chr13:39489325..39490251,2	MCF-7	breast:
4	chr13:39244484..39245347-chr13:39337636..39338399,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs2442331	1.00[EUR][1000 genomes]
rs2442333	1.00[EUR][1000 genomes]
rs2442334	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442336	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442345	1.00[EUR][1000 genomes]
rs2442346	1.00[EUR][1000 genomes]
rs2442360	1.00[EUR][1000 genomes]
rs2442366	1.00[EUR][1000 genomes]
rs2442371	1.00[EUR][1000 genomes]
rs2442372	1.00[EUR][1000 genomes]
rs2442374	1.00[EUR][1000 genomes]
rs2442376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2442378	1.00[EUR][1000 genomes]
rs2442380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2496398	1.00[EUR][1000 genomes]
rs2496403	1.00[EUR][1000 genomes]
rs2496411	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2496413	1.00[EUR][1000 genomes]
rs2496414	1.00[EUR][1000 genomes]
rs2496420	0.90[YRI][hapmap]
rs2496421	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2496424	1.00[EUR][1000 genomes]
rs2496426	1.00[EUR][1000 genomes]
rs2496428	1.00[AMR][1000 genomes]
rs2496432	1.00[EUR][1000 genomes]
rs2496447	1.00[EUR][1000 genomes]
rs2595557	1.00[EUR][1000 genomes]
rs2595559	1.00[EUR][1000 genomes]
rs2595562	1.00[EUR][1000 genomes]
rs2595567	1.00[EUR][1000 genomes]
rs2805082	1.00[EUR][1000 genomes]
rs2805083	1.00[EUR][1000 genomes]
rs2805084	1.00[EUR][1000 genomes]
rs2805085	1.00[EUR][1000 genomes]
rs2805089	1.00[EUR][1000 genomes]
rs7320346	1.00[EUR][1000 genomes]
rs7325603	1.00[AMR][1000 genomes]
rs7991794	1.00[AMR][1000 genomes]
rs9315610	0.83[AMR][1000 genomes]
rs9603410	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39244600-39245000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:39244600-39245200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:39244600-39245600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:39244600-39245800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr13:39244800-39246200	Enhancers	Stomach Smooth Muscle	stomach

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