Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2442331	1.00[EUR][1000 genomes]
rs2442332	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442333	1.00[EUR][1000 genomes]
rs2442336	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2442345	1.00[EUR][1000 genomes]
rs2442346	1.00[EUR][1000 genomes]
rs2442360	1.00[EUR][1000 genomes]
rs2442366	1.00[EUR][1000 genomes]
rs2442371	1.00[EUR][1000 genomes]
rs2442372	1.00[EUR][1000 genomes]
rs2442374	1.00[EUR][1000 genomes]
rs2442376	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442378	1.00[EUR][1000 genomes]
rs2442380	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2496398	1.00[EUR][1000 genomes]
rs2496403	1.00[EUR][1000 genomes]
rs2496411	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2496413	1.00[EUR][1000 genomes]
rs2496414	1.00[EUR][1000 genomes]
rs2496421	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2496424	1.00[EUR][1000 genomes]
rs2496426	1.00[EUR][1000 genomes]
rs2496432	1.00[EUR][1000 genomes]
rs2496447	1.00[EUR][1000 genomes]
rs2595557	1.00[EUR][1000 genomes]
rs2595559	1.00[EUR][1000 genomes]
rs2595562	1.00[EUR][1000 genomes]
rs2595567	1.00[EUR][1000 genomes]
rs2805082	1.00[EUR][1000 genomes]
rs2805083	1.00[EUR][1000 genomes]
rs2805084	1.00[EUR][1000 genomes]
rs2805085	1.00[EUR][1000 genomes]
rs2805089	1.00[EUR][1000 genomes]
rs7320346	1.00[EUR][1000 genomes]
rs9603404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39239600-39244600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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