Variant report

Variant	rs9603404
Chromosome Location	chr13:39232566-39232567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2442334	1.00[AMR][1000 genomes]
rs2442336	1.00[AMR][1000 genomes]
rs2496411	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39227200-39235000	Weak transcription	Ovary	ovary
2	chr13:39230800-39233000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39231200-39233600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:39231400-39234800	Weak transcription	Fetal Kidney	kidney
5	chr13:39231600-39233000	Weak transcription	Fetal Lung	lung
6	chr13:39231600-39234800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:39231600-39238800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:39232000-39236000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:39232200-39236200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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