Variant report

Variant	rs2442346
Chromosome Location	chr13:39223651-39223652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2442331	1.00[EUR][1000 genomes]
rs2442332	1.00[EUR][1000 genomes]
rs2442333	1.00[EUR][1000 genomes]
rs2442334	1.00[EUR][1000 genomes]
rs2442336	1.00[EUR][1000 genomes]
rs2442345	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442360	1.00[EUR][1000 genomes]
rs2442366	1.00[EUR][1000 genomes]
rs2442371	1.00[EUR][1000 genomes]
rs2442372	1.00[EUR][1000 genomes]
rs2442374	1.00[EUR][1000 genomes]
rs2442376	1.00[EUR][1000 genomes]
rs2442378	1.00[EUR][1000 genomes]
rs2442380	1.00[EUR][1000 genomes]
rs2496398	1.00[EUR][1000 genomes]
rs2496403	1.00[EUR][1000 genomes]
rs2496411	1.00[EUR][1000 genomes]
rs2496413	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2496414	1.00[EUR][1000 genomes]
rs2496421	1.00[EUR][1000 genomes]
rs2496424	1.00[EUR][1000 genomes]
rs2496426	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2496432	1.00[EUR][1000 genomes]
rs2496447	1.00[EUR][1000 genomes]
rs2595557	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2595559	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2595562	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2595567	1.00[EUR][1000 genomes]
rs2805082	1.00[EUR][1000 genomes]
rs2805083	1.00[EUR][1000 genomes]
rs2805084	1.00[EUR][1000 genomes]
rs2805085	1.00[EUR][1000 genomes]
rs2805089	1.00[EUR][1000 genomes]
rs7320346	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39221600-39224200	Weak transcription	Fetal Lung	lung
2	chr13:39222400-39224800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:39223000-39224200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:39223200-39223800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:39223200-39224400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:39223600-39224400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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