Variant report

Variant	rs7325603
Chromosome Location	chr13:39288952-39288953
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2442332	1.00[AMR][1000 genomes]
rs2442376	1.00[AMR][1000 genomes]
rs2442380	1.00[AMR][1000 genomes]
rs2496421	1.00[AMR][1000 genomes]
rs2496428	1.00[AMR][1000 genomes]
rs7329184	0.87[AFR][1000 genomes]
rs7991794	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9315610	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs9576609	0.87[AFR][1000 genomes]
rs9603410	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9805696	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39279200-39294600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39282200-39293200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:39283400-39300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:39287800-39292600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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