Variant report

Variant	rs2442510
Chromosome Location	chr8:6300899-6300900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:6296050..6297803-chr8:6299786..6301470,2	K562	blood:
2	chr8:6295181..6297550-chr8:6299786..6302300,2	K562	blood:

Extended variants
information (count: 199 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:179)

rs_ID	r²[population]
rs1031309	0.82[YRI][hapmap]
rs1054073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1054074	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11137028	0.84[CHB][hapmap];0.88[CHD][hapmap]
rs11137029	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11137033	0.89[JPT][hapmap]
rs1129703	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1129704	0.94[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1129706	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545613	0.83[ASN][1000 genomes]
rs12545939	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12546890	0.96[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12550299	0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12674488	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs12675930	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12676907	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12676922	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12677501	0.89[JPT][hapmap]
rs12679619	0.88[CHD][hapmap];0.94[JPT][hapmap]
rs12681195	0.82[ASN][1000 genomes]
rs13248420	0.94[JPT][hapmap]
rs13267816	0.89[JPT][hapmap]
rs13281967	0.94[JPT][hapmap]
rs13282022	0.94[JPT][hapmap]
rs13282577	1.00[CHD][hapmap];0.94[JPT][hapmap]
rs1373306	0.89[CEU][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1373307	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1530408	0.88[ASW][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1530409	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1550690	0.93[JPT][hapmap]
rs17077031	0.83[ASN][1000 genomes]
rs17077056	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17077067	0.94[JPT][hapmap]
rs17077083	0.94[JPT][hapmap]
rs17077094	0.94[JPT][hapmap]
rs17077109	0.89[JPT][hapmap]
rs17609194	0.89[CEU][hapmap]
rs17613024	0.89[CHD][hapmap];0.94[JPT][hapmap]
rs1867385	0.82[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1867386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1868551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1966818	0.84[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1968585	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2034143	0.83[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2053618	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2166006	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2251947	0.82[ASN][1000 genomes]
rs2251956	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2254903	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2277136	0.92[CHD][hapmap];0.94[JPT][hapmap]
rs2305022	0.82[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs2440395	0.84[ASN][1000 genomes]
rs2440396	0.94[JPT][hapmap]
rs2440397	0.94[JPT][hapmap]
rs2440403	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2440406	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2440408	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2440411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2440412	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2440413	0.94[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2440414	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2440415	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2440416	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440419	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2440422	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2440423	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2440424	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2440427	0.94[CEU][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2440428	0.89[JPT][hapmap]
rs2440432	0.94[JPT][hapmap]
rs2442485	0.94[JPT][hapmap]
rs2442491	0.93[JPT][hapmap]
rs2442493	0.94[JPT][hapmap]
rs2442497	0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2442499	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2442500	0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2442502	0.81[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2442503	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2442505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2442506	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2442507	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2442511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442512	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2442514	0.94[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2442515	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2442516	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2442517	0.89[JPT][hapmap]
rs2442518	0.88[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2442519	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2442520	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2442521	1.00[CEU][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2442522	0.94[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2442523	1.00[CEU][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2442524	0.94[CEU][hapmap];0.84[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2442527	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2442530	0.83[EUR][1000 genomes]
rs2442533	0.88[ASW][hapmap];0.85[CEU][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2442546	0.88[ASW][hapmap];0.92[MEX][hapmap]
rs2515491	0.81[EUR][1000 genomes]
rs2515555	0.84[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515564	0.92[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515565	0.94[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap]
rs2515568	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2515570	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515571	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515572	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2515573	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2515576	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2515585	0.94[JPT][hapmap]
rs2916733	0.81[TSI][hapmap]
rs2916739	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2916740	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2916741	0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2916742	0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2916743	0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2916745	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2916746	0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2916749	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs2916750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2920659	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2920660	0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2920661	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2920662	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2920665	1.00[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2920666	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2920668	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2920669	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2920671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2920672	0.80[EUR][1000 genomes]
rs2920674	0.94[JPT][hapmap]
rs2920676	0.84[CHB][hapmap];0.88[CHD][hapmap]
rs2920677	0.88[JPT][hapmap]
rs2920681	0.94[JPT][hapmap]
rs2920689	0.89[JPT][hapmap]
rs2922811	0.89[JPT][hapmap];0.89[YRI][hapmap]
rs2922813	0.88[JPT][hapmap]
rs2922814	0.89[JPT][hapmap]
rs2922815	0.89[JPT][hapmap]
rs2922818	0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2922819	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2922820	0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2922821	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2922822	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2922823	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2922824	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2922833	0.94[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2979647	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2979648	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2979649	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2979650	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2979651	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2979652	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3020270	0.94[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3020275	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3020278	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3816402	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56073811	0.83[ASN][1000 genomes]
rs60915478	0.82[ASN][1000 genomes]
rs6559160	0.92[MEX][hapmap]
rs6559161	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6559162	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6559164	0.94[JPT][hapmap]
rs6989935	0.94[JPT][hapmap]
rs6993448	0.86[CEU][hapmap]
rs6995735	0.82[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs7001036	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7001056	0.84[EUR][1000 genomes]
rs7002187	0.94[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7002509	0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs7008037	0.84[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.80[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7008227	0.92[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009134	0.83[MEX][hapmap]
rs7824209	0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7833481	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs894888	0.88[ASW][hapmap]
rs894895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930557	1.00[CEU][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs963754	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9692902	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890034	chr8:5926632-6427868	Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv949501	chr8:6081704-6303511	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3506199	chr8:6116693-6536592	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	esv3506200	chr8:6116693-6536592	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1024103	chr8:6124125-6303511	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1026950	chr8:6127991-6303511	Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1025734	chr8:6128828-6303511	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1022940	chr8:6128828-6304814	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1028552	chr8:6129221-6303511	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1026004	chr8:6144798-6307692	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv539431	chr8:6144798-6307692	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv933107	chr8:6173244-6312807	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv482828	chr8:6182711-6355710	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv890055	chr8:6237397-6351252	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv531468	chr8:6248682-6309194	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv933282	chr8:6261036-6440592	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
19	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
20	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2442510	XKR5	cis	parietal	SCAN
rs2442510	AGPAT5	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6265000-6339200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:6265200-6302200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:6265400-6303800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:6267600-6302400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:6273600-6302800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:6278600-6305400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:6281800-6302200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:6282800-6313400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:6287000-6301600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:6287200-6309200	Weak transcription	Fetal Brain Male	brain
11	chr8:6287600-6306600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr8:6287600-6307600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:6287600-6344400	Weak transcription	Small Intestine	intestine
14	chr8:6287800-6304800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:6288000-6301000	Weak transcription	Psoas Muscle	Psoas
16	chr8:6288400-6304400	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr8:6289000-6308000	Strong transcription	Dnd41	blood
18	chr8:6289200-6304000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:6289200-6306200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr8:6289200-6306400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:6289400-6301000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:6289400-6303400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:6289400-6306600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:6289600-6303800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr8:6290000-6305000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr8:6290400-6303000	Strong transcription	Thymus	Thymus
27	chr8:6291800-6305800	Weak transcription	Stomach Mucosa	stomach
28	chr8:6292800-6302200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:6293200-6302200	Weak transcription	HSMMtube	muscle
30	chr8:6294800-6304600	Strong transcription	Fetal Intestine Large	intestine
31	chr8:6295000-6301000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:6295000-6305000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr8:6295000-6305000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:6295600-6301000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:6295600-6301200	Weak transcription	NHEK	skin
36	chr8:6295600-6302200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:6295600-6302200	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:6295600-6302200	Weak transcription	Spleen	Spleen
39	chr8:6295800-6302200	Weak transcription	Brain Substantia Nigra	brain
40	chr8:6296000-6302200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr8:6296400-6301000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:6296400-6302200	Weak transcription	NH-A	brain
43	chr8:6297400-6303400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr8:6297400-6303400	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:6297400-6304600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr8:6297400-6305000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:6297600-6305000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr8:6297800-6303000	Strong transcription	HSMM	muscle
49	chr8:6297800-6303200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr8:6297800-6303400	Strong transcription	HepG2	liver

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