Variant report

Variant	rs2444880
Chromosome Location	chr8:98965870-98965871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:98963788..98966015-chr8:99056664..99058893,2	MCF-7	breast:
2	chr8:98964671..98967862-chr8:98969521..98972694,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156482	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1470957	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2444878	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2444881	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2512030	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2512032	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3816496	0.91[EUR][1000 genomes]
rs897189	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1028055	chr8:98780445-98977746	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891214	chr8:98849303-98990399	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv891215	chr8:98910287-98980663	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98938200-98969200	Weak transcription	Colonic Mucosa	Colon
2	chr8:98941000-98968000	Weak transcription	Esophagus	oesophagus
3	chr8:98945600-98970200	Weak transcription	Spleen	Spleen
4	chr8:98956600-98968800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:98956600-98973600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:98957200-98970800	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:98957200-98973600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:98957800-98969200	Weak transcription	Left Ventricle	heart
9	chr8:98963400-98976000	Weak transcription	Fetal Brain Male	brain
10	chr8:98963600-98969000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:98963800-98970600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:98963800-98975200	Weak transcription	Placenta	Placenta
13	chr8:98964400-98968800	Weak transcription	Fetal Kidney	kidney
14	chr8:98964600-98970800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:98964800-98968800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:98964800-98968800	Weak transcription	Pancreas	Pancrea
17	chr8:98964800-98968800	Weak transcription	Hela-S3	cervix
18	chr8:98964800-98969000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr8:98964800-98970800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:98964800-98976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:98965000-98966000	Enhancers	Ovary	ovary
22	chr8:98965000-98966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:98965000-98966600	Weak transcription	Brain Anterior Caudate	brain
24	chr8:98965000-98966600	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:98965000-98967400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:98965000-98967800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:98965000-98968600	Weak transcription	Fetal Heart	heart
28	chr8:98965000-98968800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:98965000-98968800	Weak transcription	Brain Substantia Nigra	brain
30	chr8:98965000-98969000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr8:98965000-98969200	Weak transcription	Fetal Lung	lung
32	chr8:98965000-98969400	Weak transcription	Brain Angular Gyrus	brain
33	chr8:98965000-98973600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:98965000-98980200	Weak transcription	Liver	Liver
35	chr8:98965200-98966800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:98965200-98969200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr8:98965400-98967800	Weak transcription	Right Atrium	heart
38	chr8:98965600-98966000	Weak transcription	Fetal Muscle Leg	muscle
39	chr8:98965600-98968600	Weak transcription	Fetal Stomach	stomach
40	chr8:98965600-98969000	Weak transcription	Adipose Nuclei	Adipose
41	chr8:98965600-98969000	Weak transcription	NHDF-Ad	bronchial
42	chr8:98965600-98970400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:98965600-98983200	Weak transcription	NHLF	lung
44	chr8:98965800-98968200	Strong transcription	Fetal Muscle Trunk	muscle

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