Variant report

Variant	rs897189
Chromosome Location	chr8:98963817-98963818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:98963788..98966015-chr8:99056664..99058893,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156482	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1470957	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2444878	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2444880	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2444881	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2444883	0.86[GIH][hapmap]
rs2512028	0.86[GIH][hapmap]
rs2512030	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2512032	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2513844	0.88[JPT][hapmap]
rs3816496	0.88[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1028055	chr8:98780445-98977746	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891214	chr8:98849303-98990399	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv891215	chr8:98910287-98980663	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98938200-98969200	Weak transcription	Colonic Mucosa	Colon
2	chr8:98941000-98968000	Weak transcription	Esophagus	oesophagus
3	chr8:98945600-98970200	Weak transcription	Spleen	Spleen
4	chr8:98950400-98964600	Weak transcription	Pancreas	Pancrea
5	chr8:98956600-98968800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:98956600-98973600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:98957200-98970800	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:98957200-98973600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:98957800-98969200	Weak transcription	Left Ventricle	heart
10	chr8:98961400-98964400	Enhancers	Ovary	ovary
11	chr8:98961800-98964200	Enhancers	Brain Anterior Caudate	brain
12	chr8:98962000-98965000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:98962000-98965000	Enhancers	Brain Substantia Nigra	brain
14	chr8:98962000-98965600	Enhancers	Fetal Stomach	stomach
15	chr8:98962200-98965000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:98962200-98965000	Enhancers	Brain Cingulate Gyrus	brain
17	chr8:98962200-98965200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:98962200-98965200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr8:98962400-98964200	Enhancers	NHLF	lung
20	chr8:98962600-98964000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:98962600-98965400	Enhancers	Fetal Muscle Leg	muscle
22	chr8:98962600-98965600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:98962800-98964800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:98962800-98965000	Enhancers	Fetal Lung	lung
25	chr8:98963000-98964200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr8:98963000-98964600	Enhancers	HSMM	muscle
27	chr8:98963000-98964800	Enhancers	HSMMtube	muscle
28	chr8:98963000-98965000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr8:98963000-98965000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr8:98963000-98965400	Enhancers	Right Atrium	heart
31	chr8:98963200-98964000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr8:98963200-98964000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr8:98963200-98964200	Weak transcription	Psoas Muscle	Psoas
34	chr8:98963200-98964400	Enhancers	Fetal Kidney	kidney
35	chr8:98963200-98964600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:98963200-98964800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:98963200-98964800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr8:98963200-98964800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr8:98963200-98965000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:98963200-98965000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr8:98963200-98965000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:98963200-98965000	Enhancers	NH-A	brain
43	chr8:98963400-98964200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:98963400-98964200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:98963400-98964200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr8:98963400-98964600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:98963400-98964600	Weak transcription	Fetal Intestine Small	intestine
48	chr8:98963400-98964800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr8:98963400-98965000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:98963400-98976000	Weak transcription	Fetal Brain Male	brain

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