Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67133300..67135377-chr8:67135506..67138428,2	MCF-7	breast:
2	chr8:67129093..67131723-chr8:67132358..67134576,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11784558	0.83[ASN][1000 genomes]
rs2446436	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2446437	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2446439	0.97[EUR][1000 genomes]
rs2446440	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2446441	0.83[ASN][1000 genomes]
rs2446444	0.83[ASN][1000 genomes]
rs2446445	0.83[ASN][1000 genomes]
rs2469259	0.83[ASN][1000 genomes]
rs2469260	0.83[ASN][1000 genomes]
rs2469271	0.83[ASN][1000 genomes]
rs2469275	0.83[ASN][1000 genomes]
rs2469276	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2469295	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2469296	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2469299	0.81[AMR][1000 genomes]
rs2469301	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2469302	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7816372	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs954519	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs954520	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67116800-67135200	Weak transcription	Placenta	Placenta
2	chr8:67119600-67135400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:67129400-67133800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:67130800-67135800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:67131400-67133800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:67132000-67135800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:67132200-67137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:67132600-67135800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:67133400-67140000	Weak transcription	Lung	lung
10	chr8:67133600-67133800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:67133600-67133800	ZNF genes & repeats	Pancreas	Pancrea

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