Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67133300..67135377-chr8:67135506..67138428,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11784558	0.85[ASN][1000 genomes]
rs2446436	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2446437	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2446438	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2446439	0.97[EUR][1000 genomes]
rs2446440	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446441	0.85[ASN][1000 genomes]
rs2446444	0.85[ASN][1000 genomes]
rs2446445	0.85[ASN][1000 genomes]
rs2469259	0.85[ASN][1000 genomes]
rs2469260	0.85[ASN][1000 genomes]
rs2469262	0.81[ASN][1000 genomes]
rs2469263	0.81[ASN][1000 genomes]
rs2469271	0.85[ASN][1000 genomes]
rs2469275	0.85[ASN][1000 genomes]
rs2469276	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2469284	0.81[ASN][1000 genomes]
rs2469286	0.81[ASN][1000 genomes]
rs2469287	0.81[ASN][1000 genomes]
rs2469295	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2469296	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2469299	0.82[AMR][1000 genomes]
rs2469301	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7816372	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs954519	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs954520	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67130800-67135800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:67132000-67135800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:67132200-67137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:67132600-67135800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:67133400-67140000	Weak transcription	Lung	lung
6	chr8:67133800-67136000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:67135200-67135800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:67135200-67137600	Enhancers	Placenta	Placenta
9	chr8:67135400-67136600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:67135600-67136000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:67135600-67136400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:67135600-67136400	Enhancers	HUES64 Cell Line	embryonic stem cell

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