Variant report

Variant	rs2448914
Chromosome Location	chr8:95350463-95350464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs2244209	0.85[ASN][1000 genomes]
rs2255130	0.86[ASN][1000 genomes]
rs2263133	0.86[ASN][1000 genomes]
rs2445698	0.88[ASN][1000 genomes]
rs2445701	0.88[ASN][1000 genomes]
rs2445702	0.86[ASN][1000 genomes]
rs2445713	0.85[ASN][1000 genomes]
rs2448907	0.84[ASN][1000 genomes]
rs2448915	0.86[ASN][1000 genomes]
rs2450551	0.88[ASN][1000 genomes]
rs2450552	0.88[ASN][1000 genomes]
rs2450555	0.86[ASN][1000 genomes]
rs2450562	0.82[ASN][1000 genomes]
rs2450563	0.82[ASN][1000 genomes]
rs2450564	0.85[ASN][1000 genomes]
rs2450565	0.82[ASN][1000 genomes]
rs2450576	0.86[ASN][1000 genomes]
rs2450577	0.86[ASN][1000 genomes]
rs2450579	0.84[ASN][1000 genomes]
rs2470727	0.86[ASN][1000 genomes]
rs2470729	0.86[ASN][1000 genomes]
rs2470730	0.86[ASN][1000 genomes]
rs2470741	0.82[ASN][1000 genomes]
rs2470743	0.82[ASN][1000 genomes]
rs2470744	0.82[ASN][1000 genomes]
rs2470745	0.82[ASN][1000 genomes]
rs2515097	0.86[ASN][1000 genomes]
rs2515101	0.84[ASN][1000 genomes]
rs2515102	0.82[ASN][1000 genomes]
rs2515119	0.86[ASN][1000 genomes]
rs2515120	0.85[ASN][1000 genomes]
rs2515121	0.88[ASN][1000 genomes]
rs2515122	0.88[ASN][1000 genomes]
rs2515132	0.88[ASN][1000 genomes]
rs2515152	0.82[ASN][1000 genomes]
rs2515158	0.85[ASN][1000 genomes]
rs2515159	0.86[ASN][1000 genomes]
rs2515160	0.86[ASN][1000 genomes]
rs2515162	0.86[ASN][1000 genomes]
rs2515163	0.86[ASN][1000 genomes]
rs2515164	0.86[ASN][1000 genomes]
rs2515166	0.85[ASN][1000 genomes]
rs2515168	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95344000-95352400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:95347400-95355400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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