Variant report

Variant	rs2515120
Chromosome Location	chr8:95339208-95339209
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10956912	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11778733	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11786007	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2244209	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255130	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2263133	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2445698	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2445701	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2445702	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2445713	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2448907	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2448914	0.85[ASN][1000 genomes]
rs2448915	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2450248	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450249	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450550	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450551	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2450552	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2450555	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2450560	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450562	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2450563	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2450564	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2450565	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2450566	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2450571	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450574	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2450576	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2450577	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2450579	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470727	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470729	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470730	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470734	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2470736	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2470737	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2470738	0.80[ASN][1000 genomes]
rs2470741	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2470743	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2470744	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2470745	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2470747	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515097	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515101	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2515102	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2515104	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515105	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515106	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515109	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515119	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515121	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2515122	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2515132	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2515142	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515151	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2515152	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2515158	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515159	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515160	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515162	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515163	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515164	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515166	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2515168	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28503419	0.84[ASN][1000 genomes]
rs3098702	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3098704	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3098727	0.92[EUR][1000 genomes]
rs3099402	0.92[EUR][1000 genomes]
rs3136400	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3136407	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3136414	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56303696	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7007534	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs882521	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95337400-95339800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:95337600-95339600	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr8:95337600-95339800	Enhancers	Colon Smooth Muscle	Colon
4	chr8:95337800-95339400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:95337800-95339400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:95337800-95339800	Enhancers	Fetal Lung	lung
7	chr8:95338000-95339600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:95338000-95339600	Enhancers	Fetal Stomach	stomach
9	chr8:95338000-95339600	Enhancers	Stomach Smooth Muscle	stomach
10	chr8:95338000-95340000	Enhancers	Adipose Nuclei	Adipose
11	chr8:95338000-95340000	Enhancers	Rectal Smooth Muscle	rectum
12	chr8:95338600-95340400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:95339000-95339600	Enhancers	Ovary	ovary
14	chr8:95339200-95343600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links