Variant report

Variant	rs3098704
Chromosome Location	chr8:95469366-95469367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95461830..95464383-chr8:95467970..95469771,2	K562	blood:
2	chr8:95468345..95469996-chr8:95473288..95475669,2	MCF-7	breast:
3	chr8:95458462..95461363-chr8:95468371..95470571,2	MCF-7	breast:
4	chr8:95467104..95469592-chr8:95471251..95474139,2	K562	blood:
5	chr8:95468221..95471036-chr8:95478071..95480711,2	K562	blood:
6	chr8:95455164..95456684-chr8:95467591..95470115,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197275	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10956912	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778733	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786007	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244209	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2255130	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2263133	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2445698	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2445701	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2445702	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445713	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2448907	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2448915	0.88[ASN][1000 genomes]
rs2450248	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450249	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450550	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450551	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2450552	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2450555	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450560	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450562	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2450563	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2450564	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2450565	0.93[ASN][1000 genomes]
rs2450566	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2450571	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450574	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450576	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2450577	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2450579	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470727	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470729	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470730	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470734	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2470736	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2470737	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470738	0.82[ASN][1000 genomes]
rs2470741	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470743	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470744	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470745	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470747	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515097	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515101	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2515102	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515104	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515105	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515109	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515119	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515120	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2515121	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515122	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515132	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515151	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2515152	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515158	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2515159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515160	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515162	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515163	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515164	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515166	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2515168	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28503419	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3098702	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3098727	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099402	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3136400	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3136407	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3136414	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56303696	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007534	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882521	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1835971	chr8:95467241-95490541	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95432400-95478600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:95449400-95485200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:95449400-95486200	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:95449800-95476200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:95449800-95479600	Weak transcription	NH-A	brain
6	chr8:95450000-95486000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:95450200-95480000	Weak transcription	NHEK	skin
8	chr8:95450400-95479800	Weak transcription	HMEC	breast
9	chr8:95450600-95478400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:95450600-95484800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:95453000-95476000	Weak transcription	HUVEC	blood vessel
12	chr8:95453000-95476400	Weak transcription	Thymus	Thymus
13	chr8:95454000-95485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:95454200-95485400	Weak transcription	Fetal Intestine Small	intestine
15	chr8:95455400-95485000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:95455600-95486200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:95456000-95471000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:95456000-95476200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:95457800-95475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:95458000-95472200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:95458000-95472400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:95459800-95476400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:95460000-95485000	Weak transcription	HepG2	liver
24	chr8:95460600-95471400	Weak transcription	Fetal Stomach	stomach
25	chr8:95461200-95469600	Weak transcription	NHLF	lung
26	chr8:95462000-95486400	Weak transcription	Primary B cells from cord blood	blood
27	chr8:95464400-95479800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:95464400-95485800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr8:95465200-95480600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:95466600-95471200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:95466800-95470600	Strong transcription	Dnd41	blood
32	chr8:95467000-95469400	Weak transcription	Fetal Thymus	thymus
33	chr8:95467000-95469400	Flanking Active TSS	GM12878-XiMat	blood
34	chr8:95467000-95469800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr8:95467000-95477200	Weak transcription	K562	blood
36	chr8:95467800-95470000	Weak transcription	HSMM	muscle
37	chr8:95467800-95473000	Weak transcription	A549	lung
38	chr8:95468000-95480400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr8:95468000-95485200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr8:95468400-95469800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr8:95468400-95473600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr8:95468400-95479800	Weak transcription	Primary T cells from cord blood	blood
43	chr8:95468600-95469400	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr8:95468600-95469400	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr8:95468600-95485800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:95468800-95469400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:95468800-95469600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:95468800-95469600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr8:95468800-95476400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:95468800-95477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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