Variant report

Variant	rs3098702
Chromosome Location	chr8:95486297-95486298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95485646..95487396-chr8:95731182..95733187,2	MCF-7	breast:
2	chr8:95484510..95486991-chr8:95494041..95495783,2	MCF-7	breast:
3	chr8:95476965..95478534-chr8:95484970..95486977,2	K562	blood:
4	chr8:95485981..95488677-chr8:95730553..95733529,2	K562	blood:
5	chr8:95459676..95462011-chr8:95483979..95486791,2	K562	blood:

Variant related genes	Relation type
ENSG00000156162	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10956912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11778733	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11786007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2244209	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2255130	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2263133	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2445698	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2445701	0.87[ASN][1000 genomes]
rs2445702	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445713	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2448907	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2448915	0.87[ASN][1000 genomes]
rs2450248	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450249	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450550	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450551	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2450552	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2450555	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450560	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450562	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2450563	0.92[ASN][1000 genomes]
rs2450564	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2450565	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2450566	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2450571	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450574	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2450576	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2450577	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2450579	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470727	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470729	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470730	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470734	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2470736	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2470737	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2470738	0.81[ASN][1000 genomes]
rs2470741	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470743	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470744	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470745	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470747	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515097	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515101	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2515102	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2515104	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515105	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515106	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515109	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515119	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515120	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2515121	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2515122	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2515132	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2515142	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515151	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515152	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2515158	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2515159	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515160	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515162	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515163	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515164	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515166	0.86[ASN][1000 genomes]
rs2515168	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28503419	0.98[ASN][1000 genomes]
rs3098704	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3098727	0.92[EUR][1000 genomes]
rs3099402	0.92[EUR][1000 genomes]
rs3136400	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3136407	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3136414	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56303696	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7007534	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882521	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1835971	chr8:95467241-95490541	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95462000-95486400	Weak transcription	Primary B cells from cord blood	blood
2	chr8:95472400-95486400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:95472800-95486600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:95475200-95486800	Weak transcription	Gastric	stomach
5	chr8:95475800-95486800	Weak transcription	Aorta	Aorta
6	chr8:95480800-95486400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:95481200-95486800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:95481600-95486400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:95483000-95487800	Active TSS	GM12878-XiMat	blood
10	chr8:95484000-95486400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:95485200-95487800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr8:95485400-95486400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:95485400-95486400	Active TSS	Fetal Brain Male	brain
14	chr8:95485400-95486800	Flanking Active TSS	Dnd41	blood
15	chr8:95485600-95486400	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:95485600-95486400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr8:95485600-95486600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr8:95485600-95486600	Flanking Active TSS	HMEC	breast
19	chr8:95485600-95486600	Flanking Active TSS	NHDF-Ad	bronchial
20	chr8:95485600-95486600	Flanking Active TSS	NHEK	skin
21	chr8:95485600-95487000	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr8:95485800-95486400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:95485800-95486400	Enhancers	Fetal Thymus	thymus
24	chr8:95485800-95486400	Enhancers	Stomach Mucosa	stomach
25	chr8:95485800-95486600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:95485800-95486600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr8:95485800-95486600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:95485800-95486600	Flanking Active TSS	Hela-S3	cervix
29	chr8:95485800-95486600	Flanking Active TSS	NH-A	brain
30	chr8:95485800-95487200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr8:95485800-95487600	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr8:95485800-95488000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:95485800-95488000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:95486000-95486400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr8:95486000-95486400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr8:95486000-95486400	Flanking Active TSS	Fetal Brain Female	brain
37	chr8:95486000-95486400	Enhancers	Fetal Intestine Large	intestine
38	chr8:95486000-95486400	Enhancers	Thymus	Thymus
39	chr8:95486000-95486600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:95486000-95486600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr8:95486000-95486600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr8:95486000-95486600	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr8:95486000-95486600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr8:95486000-95486600	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr8:95486000-95486600	Enhancers	Brain Cingulate Gyrus	brain
46	chr8:95486000-95486600	Flanking Active TSS	Fetal Kidney	kidney
47	chr8:95486000-95486600	Flanking Active TSS	Fetal Lung	lung
48	chr8:95486000-95486600	Enhancers	Placenta Amnion	Placenta Amnion
49	chr8:95486000-95486800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:95486000-95486800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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