Variant report

Variant	rs11778733
Chromosome Location	chr8:95455367-95455368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95455164..95456684-chr8:95467591..95470115,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10956912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244209	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2255130	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2263133	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2445698	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2445701	0.88[ASN][1000 genomes]
rs2445702	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445713	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2448907	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2448915	0.88[ASN][1000 genomes]
rs2450248	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450249	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450550	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450551	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2450552	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2450555	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450560	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450562	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2450563	0.93[ASN][1000 genomes]
rs2450564	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2450565	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2450566	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2450571	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2450574	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450576	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2450577	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2450579	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470727	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470729	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470730	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470734	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2470736	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2470737	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470738	0.82[ASN][1000 genomes]
rs2470741	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470743	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470744	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470745	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470747	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515097	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515101	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2515102	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515104	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515105	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515106	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515109	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515119	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515120	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2515121	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515122	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515132	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515142	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515151	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2515152	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515158	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2515159	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515160	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515162	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515163	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515164	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515166	0.86[ASN][1000 genomes]
rs2515168	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28503419	0.99[ASN][1000 genomes]
rs3098702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3098704	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098727	0.96[EUR][1000 genomes]
rs3099402	0.96[EUR][1000 genomes]
rs3136400	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3136407	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3136414	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56303696	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007534	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882521	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv891202	chr8:95445660-95456986	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95432400-95478600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:95442600-95465400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:95448800-95457200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:95449400-95485200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:95449400-95486200	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:95449800-95476200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:95449800-95479600	Weak transcription	NH-A	brain
8	chr8:95450000-95455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:95450000-95458800	Weak transcription	Fetal Stomach	stomach
10	chr8:95450000-95468200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:95450000-95486000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:95450200-95464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:95450200-95480000	Weak transcription	NHEK	skin
14	chr8:95450400-95460600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:95450400-95479800	Weak transcription	HMEC	breast
16	chr8:95450600-95478400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:95450600-95484800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:95451400-95457200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:95451400-95460000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:95451400-95467800	Weak transcription	Small Intestine	intestine
21	chr8:95452400-95455800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:95452800-95456400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:95453000-95456800	Weak transcription	K562	blood
24	chr8:95453000-95457000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:95453000-95476000	Weak transcription	HUVEC	blood vessel
26	chr8:95453000-95476400	Weak transcription	Thymus	Thymus
27	chr8:95453200-95456000	Weak transcription	Fetal Lung	lung
28	chr8:95453400-95456000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:95453600-95458800	Weak transcription	Pancreas	Pancrea
30	chr8:95453800-95456200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr8:95454000-95456800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:95454000-95456800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:95454000-95456800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:95454000-95459800	Weak transcription	Primary B cells from cord blood	blood
35	chr8:95454000-95462000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr8:95454000-95464800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:95454000-95467400	Weak transcription	Primary T cells from cord blood	blood
38	chr8:95454000-95485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr8:95454200-95456600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:95454200-95456800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:95454200-95456800	Weak transcription	Fetal Intestine Large	intestine
42	chr8:95454200-95456800	Weak transcription	Gastric	stomach
43	chr8:95454200-95456800	Weak transcription	A549	lung
44	chr8:95454200-95457000	Weak transcription	Stomach Mucosa	stomach
45	chr8:95454200-95460000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:95454200-95485400	Weak transcription	Fetal Intestine Small	intestine
47	chr8:95454600-95456800	Weak transcription	HepG2	liver
48	chr8:95454800-95456000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:95455000-95455400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:95455000-95455400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links