Variant report

Variant	rs245162
Chromosome Location	chr5:127234096-127234097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:127232675..127235268-chr5:127236126..127238266,2	K562	blood:
2	chr5:127233004..127236913-chr5:127245054..127247507,3	MCF-7	breast:
3	chr5:127232934..127234618-chr5:127322508..127324974,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10491255	0.96[ASN][1000 genomes]
rs13155003	0.97[ASN][1000 genomes]
rs13166824	0.97[ASN][1000 genomes]
rs13187008	0.97[ASN][1000 genomes]
rs151848	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151850	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151851	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151852	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17164526	0.94[ASN][1000 genomes]
rs17164533	0.96[ASN][1000 genomes]
rs17164534	0.96[ASN][1000 genomes]
rs17839667	0.96[ASN][1000 genomes]
rs245161	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245164	0.96[EUR][1000 genomes]
rs245166	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245168	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245169	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245170	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836339	0.97[ASN][1000 genomes]
rs58316019	0.95[ASN][1000 genomes]
rs62375865	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734642	0.93[ASN][1000 genomes]
rs7708799	0.97[ASN][1000 genomes]
rs7723029	0.94[ASN][1000 genomes]
rs9327454	0.92[ASN][1000 genomes]
rs9327455	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127228800-127234200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:127229000-127234200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:127229000-127234200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:127229000-127234200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:127229000-127234400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:127229200-127234200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:127229200-127234200	Weak transcription	Brain Anterior Caudate	brain
8	chr5:127229200-127234200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:127229400-127234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:127229400-127234200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr5:127229400-127234200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:127229400-127234200	Weak transcription	Brain Substantia Nigra	brain
13	chr5:127229400-127234200	Weak transcription	HMEC	breast
14	chr5:127229800-127234400	Weak transcription	NHEK	skin
15	chr5:127231200-127234400	Weak transcription	A549	lung
16	chr5:127233600-127234800	Enhancers	Brain Angular Gyrus	brain
17	chr5:127233800-127235200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:127234000-127234800	Enhancers	Brain Hippocampus Middle	brain

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