Variant report

Variant	rs245170
Chromosome Location	chr5:127225607-127225608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127220419..127223982-chr5:127224683..127227982,4	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10491255	0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs13155003	0.97[ASN][1000 genomes]
rs13166824	0.97[ASN][1000 genomes]
rs13187008	0.97[ASN][1000 genomes]
rs151848	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151850	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151852	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17164526	0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.86[TSI][hapmap];0.94[ASN][1000 genomes]
rs17164533	0.96[ASN][1000 genomes]
rs17164534	0.96[ASN][1000 genomes]
rs17839667	0.96[ASN][1000 genomes]
rs245161	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245162	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245164	0.96[EUR][1000 genomes]
rs245166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245168	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836339	0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.86[TSI][hapmap];0.97[ASN][1000 genomes]
rs58316019	0.95[ASN][1000 genomes]
rs62375865	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734642	0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.93[ASN][1000 genomes]
rs7708799	0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7723029	0.94[ASN][1000 genomes]
rs9327454	0.92[ASN][1000 genomes]
rs9327455	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127221200-127226600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:127221200-127227400	Weak transcription	Brain Anterior Caudate	brain
3	chr5:127221200-127228200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:127221200-127228200	Weak transcription	Fetal Stomach	stomach
5	chr5:127222000-127228600	Weak transcription	Left Ventricle	heart
6	chr5:127222200-127227400	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:127222200-127227600	Weak transcription	HSMMtube	muscle
8	chr5:127222600-127228600	Weak transcription	Fetal Intestine Small	intestine
9	chr5:127222800-127227200	Weak transcription	HUVEC	blood vessel
10	chr5:127222800-127227400	Weak transcription	Stomach Mucosa	stomach
11	chr5:127224800-127226400	Weak transcription	A549	lung

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