Variant report

Variant	rs2451775
Chromosome Location	chr15:75595416-75595417
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:75595395-75595445	HCT-116	colon:	n/a
2	chr15:75595395-75595445	HepG2	liver:	n/a
3	chr15:75595395-75595445	NHDF-neo	bronchial:	n/a
4	chr15:75595395-75595445	MCF-7	breast:	n/a
5	chr15:75595395-75595445	GM19239	blood:	n/a
6	chr15:75595395-75595445	NT2-D1	testis:	n/a
7	chr15:75595395-75595445	H1-hESC	embryonic stem cell:	embryo
8	chr15:75595395-75595445	GM06990	blood:	n/a
9	chr15:75595395-75595445	HUVEC	blood vessel:	n/a
10	chr15:75595395-75595445	NHBE	bronchial:	n/a
11	chr15:75595395-75595445	MCF10A-Er-Src	breast:	n/a
12	chr15:75595395-75595445	Hela-S3	cervix:	n/a
13	chr15:75595395-75595445	HIPEpiC	eye:	n/a
14	chr15:75595395-75595445	LNCaP	prostate:	n/a
15	chr15:75595395-75595445	GM12891	blood:	n/a
16	chr15:75595395-75595445	SK-N-SH	brain:	n/a
17	chr15:75595395-75595445	SK-N-MC	brain:	n/a
18	chr15:75595395-75595445	PANC-1	pancreas:	n/a
19	chr15:75595395-75595445	RPTEC	kidney:	n/a
20	chr15:75595395-75595445	Caco-2	colon:	n/a
21	chr15:75595395-75595445	HL-60	blood:	n/a
22	chr15:75595395-75595445	K562	blood:	n/a
23	chr15:75595395-75595445	HMEC	breast:	n/a
24	chr15:75595395-75595445	HPAEpiC	pulmonary alveolar:	n/a
25	chr15:75595395-75595445	GM12892	blood:	n/a
26	chr15:75595395-75595445	PrEC	prostate:	n/a
27	chr15:75595395-75595445	HEK293	kidney:	embryo
28	chr15:75595395-75595445	AG04450	lung:	fetal
29	chr15:75595395-75595445	NH-A	brain:	n/a
30	chr15:75595395-75595445	ProgFib	skin:	n/a
31	chr15:75595395-75595445	SKMC	muscle:	n/a
32	chr15:75595395-75595445	NB4	blood:	n/a
33	chr15:75595395-75595445	SK-N-SH_RA	brain:	n/a
34	chr15:75595395-75595445	ECC-1	luminal epithelium:	n/a
35	chr15:75595395-75595445	AG09309	skin:	n/a
36	chr15:75595395-75595445	BE2_C	brain:	n/a
37	chr15:75595395-75595445	AoSMC	blood vessel:	n/a
38	chr15:75595395-75595445	IMR90	lung:	fetal
39	chr15:75595395-75595445	HCPEpiC	choroid plexus:	n/a
40	chr15:75595395-75595445	HNPCEpiC	eye:	n/a
41	chr15:75595395-75595445	GM12878	blood:	n/a
42	chr15:75595395-75595445	HRPEpiC	eye:	n/a
43	chr15:75595395-75595445	HCM	heart:	n/a
44	chr15:75595395-75595445	AG10803	skin:	n/a
45	chr15:75595395-75595445	SAEC	small airway:	n/a
46	chr15:75595395-75595445	Jurkat	blood:	n/a
47	chr15:75595395-75595445	HAEpiC	amniotic membrane:	n/a
48	chr15:75595395-75595445	HRE	kidney:	n/a
49	chr15:75595395-75595445	U87	brain:	n/a
50	chr15:75595395-75595445	PFSK-1	brain:	n/a

No data

Variant related genes	Relation type
DNM1P34	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11072538	1.00[AMR][1000 genomes]
rs11072539	1.00[AMR][1000 genomes]
rs11856221	1.00[AMR][1000 genomes]
rs4886435	0.83[AFR][1000 genomes]
rs4886685	0.83[AFR][1000 genomes]
rs4886686	0.83[AFR][1000 genomes]
rs4886689	0.83[AFR][1000 genomes]
rs8032031	0.83[AFR][1000 genomes]
rs8035510	0.83[AFR][1000 genomes]
rs8035796	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv482859	chr15:75493899-75688451	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv1035829	chr15:75504534-75692417	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	nsv977736	chr15:75509295-75632679	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv3332853	chr15:75538752-75607377	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75595000-75595600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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