Variant report
| Variant | rs4886686 |
|---|---|
| Chromosome Location | chr15:75618709-75618710 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | PAX5 | chr15:75618549-75619107 | GM12878 | blood: | n/a | n/a |
| 2 | GABPA | chr15:75618607-75618716 | Hela-S3 | cervix: | n/a | n/a |
| 3 | SP1 | chr15:75618559-75619064 | GM12878 | blood: | n/a | n/a |
| 4 | PAX5 | chr15:75618566-75618772 | GM12878 | blood: | n/a | n/a |
| 5 | POU2F2 | chr15:75618513-75619217 | GM12878 | blood: | n/a | n/a |
| 6 | PAX5 | chr15:75618492-75618982 | GM12878 | blood: | n/a | n/a |
| 7 | TCF12 | chr15:75618671-75618926 | GM12878 | blood: | n/a | n/a |
| 8 | IRF4 | chr15:75618485-75619053 | GM12878 | blood: | n/a | n/a |
| 9 | IRF4 | chr15:75618577-75618862 | GM12878 | blood: | n/a | n/a |
| 10 | EBF1 | chr15:75618553-75618885 | GM12878 | blood: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:75614033..75615886-chr15:75617581..75620127,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ANP32BP1 | TF binding region |
| ENSG00000259790 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs12591309 | 0.84[ASN][1000 genomes] |
| rs12593870 | 0.84[ASN][1000 genomes] |
| rs12594671 | 0.92[ASN][1000 genomes] |
| rs2451775 | 0.83[AFR][1000 genomes] |
| rs34234047 | 0.82[ASN][1000 genomes] |
| rs4433783 | 0.86[AFR][1000 genomes] |
| rs4886434 | 0.94[ASN][1000 genomes] |
| rs4886435 | 1.00[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4886685 | 1.00[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4886689 | 1.00[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4886697 | 0.84[ASN][1000 genomes] |
| rs4886701 | 0.81[ASN][1000 genomes] |
| rs8032031 | 1.00[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8035510 | 1.00[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs8035796 | 1.00[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9788768 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039713 | chr15:75394213-75674389 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 96 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037713 | chr15:75401213-75665304 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 96 gene(s) | inside rSNPs | diseases |
| 3 | nsv482859 | chr15:75493899-75688451 | Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035829 | chr15:75504534-75692417 | Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 5 | nsv977736 | chr15:75509295-75632679 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 6 | nsv531901 | chr15:75600108-76019966 | Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 166 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:75618000-75628000 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr15:75618200-75618800 | Enhancers | HepG2 | liver |
| 3 | chr15:75618200-75619600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
