Variant report

Variant	rs4886701
Chromosome Location	chr15:75705525-75705526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12591076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591954	1.00[EUR][1000 genomes]
rs12592026	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12592505	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12593372	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12593870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594671	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28372857	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34234047	0.84[ASN][1000 genomes]
rs4886434	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4886435	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886685	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4886686	0.81[ASN][1000 genomes]
rs4886689	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8032031	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8035510	1.00[EUR][1000 genomes]
rs8035796	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9788768	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75662200-75715600	Strong transcription	Placenta	Placenta
2	chr15:75662400-75707600	Strong transcription	Primary T helper cells PMA-I stimulated	--
3	chr15:75662400-75717000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:75662400-75731400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:75662600-75707400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:75662600-75708000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:75662600-75708000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:75662600-75708600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:75662600-75722800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:75662800-75709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:75662800-75723000	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:75663000-75707800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:75663000-75708000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:75663000-75708200	Strong transcription	Fetal Thymus	thymus
15	chr15:75663000-75708600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:75663000-75709400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr15:75663000-75710000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr15:75663200-75706600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr15:75663200-75707800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:75663200-75707800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:75663400-75707200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:75663400-75713000	Strong transcription	Thymus	Thymus
23	chr15:75663600-75705600	Strong transcription	Left Ventricle	heart
24	chr15:75663600-75705600	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:75663600-75706400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:75663600-75707200	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr15:75663600-75707800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:75663600-75708000	Strong transcription	Primary T cells from cord blood	blood
29	chr15:75664400-75708000	Strong transcription	Dnd41	blood
30	chr15:75665800-75723200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:75671400-75705800	Strong transcription	Fetal Muscle Leg	muscle
32	chr15:75671400-75706400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:75671400-75708000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr15:75671400-75717800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:75671600-75708400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:75674600-75707800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr15:75677400-75706600	Strong transcription	Fetal Intestine Large	intestine
38	chr15:75677400-75707800	Strong transcription	Liver	Liver
39	chr15:75679000-75706800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:75679200-75707600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:75679600-75707600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr15:75680600-75706600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:75683000-75730200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:75683600-75706600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr15:75684000-75712400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:75684400-75717800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr15:75690400-75715600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:75691200-75705800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:75692000-75707400	Strong transcription	Hela-S3	cervix
50	chr15:75695800-75707800	Strong transcription	Rectal Mucosa Donor 29	rectum

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