Variant report
| Variant | rs2452531 |
|---|---|
| Chromosome Location | chr15:50093575-50093576 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:50092819..50094649-chr15:50096993..50098601,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12372954 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16962848 | 0.91[AMR][1000 genomes] |
| rs2414013 | 0.95[AMR][1000 genomes] |
| rs2444049 | 0.98[AMR][1000 genomes] |
| rs2449860 | 0.89[AMR][1000 genomes] |
| rs2449861 | 0.95[AMR][1000 genomes] |
| rs2452528 | 0.98[AMR][1000 genomes] |
| rs2456844 | 0.98[AMR][1000 genomes] |
| rs2456845 | 0.98[AMR][1000 genomes] |
| rs500721 | 0.91[AMR][1000 genomes] |
| rs504287 | 0.89[AMR][1000 genomes] |
| rs514103 | 0.91[AMR][1000 genomes] |
| rs515764 | 0.91[AMR][1000 genomes] |
| rs516375 | 0.91[AMR][1000 genomes] |
| rs554725 | 0.91[AMR][1000 genomes] |
| rs56711987 | 0.91[AMR][1000 genomes] |
| rs686620 | 0.89[AMR][1000 genomes] |
| rs691215 | 0.91[AMR][1000 genomes] |
| rs691852 | 0.91[AMR][1000 genomes] |
| rs692106 | 0.91[AMR][1000 genomes] |
| rs692531 | 0.91[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044277 | chr15:49921547-50702386 | Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 2 | nsv542380 | chr15:49921547-50702386 | Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 3 | nsv1528 | chr15:50067958-50112958 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1047047 | chr15:50070224-50125096 | Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1042311 | chr15:50083175-50125096 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | esv2761888 | chr15:50083187-50125108 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 7 | nsv542381 | chr15:50086150-50115876 | Enhancers Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:50093400-50093800 | Enhancers | Monocytes-CD14+_RO01746 | blood |
