Variant report

Variant	rs2452533
Chromosome Location	chr15:50097860-50097861
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50092819..50094649-chr15:50096993..50098601,2	MCF-7	breast:
2	chr15:50097374..50099076-chr15:50108768..50110435,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11634538	0.81[CEU][hapmap]
rs12442186	0.81[AMR][1000 genomes]
rs12909601	0.81[AMR][1000 genomes]
rs1395882	0.83[AMR][1000 genomes]
rs1395883	0.84[AMR][1000 genomes]
rs1395885	0.84[AMR][1000 genomes]
rs1395886	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1507584	0.85[AMR][1000 genomes]
rs1507585	0.84[AMR][1000 genomes]
rs1507586	0.85[AMR][1000 genomes]
rs1588122	0.82[AMR][1000 genomes]
rs1848282	0.85[AMR][1000 genomes]
rs1848283	0.85[AMR][1000 genomes]
rs1848284	0.84[AMR][1000 genomes]
rs2413968	0.81[CEU][hapmap]
rs2413969	0.81[CEU][hapmap]
rs2452534	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2452535	0.85[AMR][1000 genomes]
rs2452538	0.85[AMR][1000 genomes]
rs2456840	0.84[AMR][1000 genomes]
rs2456841	0.84[AMR][1000 genomes]
rs2456842	0.82[AMR][1000 genomes]
rs2660966	0.85[AMR][1000 genomes]
rs35861473	0.81[AMR][1000 genomes]
rs479062	0.94[EUR][1000 genomes]
rs521695	0.94[EUR][1000 genomes]
rs610958	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs652222	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs660135	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs667832	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs676892	0.91[EUR][1000 genomes]
rs677361	0.96[EUR][1000 genomes]
rs691050	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs937169	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1528	chr15:50067958-50112958	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1047047	chr15:50070224-50125096	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1042311	chr15:50083175-50125096	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2761888	chr15:50083187-50125108	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542381	chr15:50086150-50115876	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50097800-50098000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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