Variant report

Variant	rs245278
Chromosome Location	chr5:57620699-57620700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs151807	0.81[CHB][hapmap]
rs151866	0.93[CEU][hapmap];0.97[EUR][1000 genomes]
rs151867	0.93[CEU][hapmap];0.97[EUR][1000 genomes]
rs151869	0.97[EUR][1000 genomes]
rs154672	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs154674	0.97[EUR][1000 genomes]
rs154675	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs173425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184999	0.86[CHB][hapmap]
rs2033227	0.88[YRI][hapmap]
rs245279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245284	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs245491	0.82[CHB][hapmap]
rs36610	0.97[EUR][1000 genomes]
rs37535	0.82[CHB][hapmap]
rs37537	0.86[CHB][hapmap]
rs41234	0.97[EUR][1000 genomes]
rs42964	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57617600-57622800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:57618800-57626000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:57618800-57626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:57619000-57621800	Weak transcription	NHEK	skin
5	chr5:57619000-57626400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:57619800-57622000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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