Variant report
| Variant | rs245284 |
|---|---|
| Chromosome Location | chr5:57633272-57633273 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs151865 | 0.90[EUR][1000 genomes] |
| rs151870 | 0.90[EUR][1000 genomes] |
| rs154675 | 0.80[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs168652 | 0.90[EUR][1000 genomes] |
| rs173425 | 0.85[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs173448 | 0.90[EUR][1000 genomes] |
| rs181749 | 0.87[EUR][1000 genomes] |
| rs193497 | 0.90[EUR][1000 genomes] |
| rs245278 | 0.85[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs245279 | 0.92[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs245281 | 0.96[EUR][1000 genomes] |
| rs245283 | 0.96[EUR][1000 genomes] |
| rs245286 | 0.90[EUR][1000 genomes] |
| rs245465 | 0.90[EUR][1000 genomes] |
| rs245466 | 0.90[EUR][1000 genomes] |
| rs245467 | 0.90[EUR][1000 genomes] |
| rs245468 | 0.87[EUR][1000 genomes] |
| rs245469 | 0.83[EUR][1000 genomes] |
| rs36646 | 0.83[EUR][1000 genomes] |
| rs36647 | 0.83[EUR][1000 genomes] |
| rs393809 | 0.81[EUR][1000 genomes] |
| rs40622 | 0.83[EUR][1000 genomes] |
| rs420498 | 0.81[EUR][1000 genomes] |
| rs42317 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3489100 | chr5:57545689-57669673 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3489101 | chr5:57545689-57669673 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57627200-57634000 | Weak transcription | Aorta | Aorta |
| 2 | chr5:57630400-57634600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
