Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:57631449..57633354-chr5:57753923..57756596,2	MCF-7	breast:
2	chr5:57626348..57628340-chr5:57631226..57633135,2	MCF-7	breast:
3	chr5:57631529..57633714-chr5:57748489..57751374,2	MCF-7	breast:
4	chr5:57626809..57628969-chr5:57631337..57632977,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs151865	0.94[EUR][1000 genomes]
rs151869	1.00[ASN][1000 genomes]
rs151870	0.94[EUR][1000 genomes]
rs154672	1.00[ASN][1000 genomes]
rs154674	1.00[ASN][1000 genomes]
rs168652	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs173448	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs181749	0.90[EUR][1000 genomes]
rs193497	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs245281	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245284	0.96[EUR][1000 genomes]
rs245286	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs245465	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs245466	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs245467	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs245468	0.90[EUR][1000 genomes]
rs245469	0.86[EUR][1000 genomes]
rs26970	0.83[EUR][1000 genomes]
rs26971	0.83[EUR][1000 genomes]
rs26972	0.83[EUR][1000 genomes]
rs26973	0.83[EUR][1000 genomes]
rs27568	0.83[EUR][1000 genomes]
rs32629	0.83[EUR][1000 genomes]
rs36610	1.00[ASN][1000 genomes]
rs36646	0.86[EUR][1000 genomes]
rs36647	0.86[EUR][1000 genomes]
rs393809	0.84[EUR][1000 genomes]
rs40622	0.86[EUR][1000 genomes]
rs41234	0.98[ASN][1000 genomes]
rs420498	0.84[EUR][1000 genomes]
rs42317	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57627200-57634000	Weak transcription	Aorta	Aorta
2	chr5:57630400-57634600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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