Variant report

Variant	rs393809
Chromosome Location	chr5:57646747-57646748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1477347	0.86[JPT][hapmap]
rs1508920	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs151865	0.90[EUR][1000 genomes]
rs151870	0.90[EUR][1000 genomes]
rs151918	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs168652	0.90[EUR][1000 genomes]
rs173448	0.90[EUR][1000 genomes]
rs181748	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs181749	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs193497	0.90[EUR][1000 genomes]
rs244699	0.86[ASN][1000 genomes]
rs244701	0.83[ASN][1000 genomes]
rs244702	0.86[ASN][1000 genomes]
rs245281	0.84[EUR][1000 genomes]
rs245283	0.84[EUR][1000 genomes]
rs245284	0.81[EUR][1000 genomes]
rs245286	0.90[EUR][1000 genomes]
rs245458	0.86[ASN][1000 genomes]
rs245459	0.86[ASN][1000 genomes]
rs245465	0.90[EUR][1000 genomes]
rs245466	0.90[EUR][1000 genomes]
rs245467	0.90[EUR][1000 genomes]
rs245468	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs245469	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2652497	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2662609	0.85[ASN][1000 genomes]
rs26970	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs26971	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26972	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26973	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26974	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs26975	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs26977	0.86[ASN][1000 genomes]
rs27568	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs27724	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs27937	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs28017	0.90[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs32629	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36646	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36647	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36648	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs375523	0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs378828	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs40169	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs40622	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420498	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs42317	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs435805	0.83[ASN][1000 genomes]
rs445309	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs696190	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs696191	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs697086	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs697136	0.86[ASN][1000 genomes]
rs697137	0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs702596	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702597	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702598	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs834934	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs834936	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs835232	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57642200-57649400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57645800-57648000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57645800-57649800	Weak transcription	Placenta	Placenta
4	chr5:57646400-57647000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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