Variant report

Variant	rs36648
Chromosome Location	chr5:57649063-57649064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs181749	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs245468	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs26970	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs26971	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs26972	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs26973	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs27568	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs32629	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36646	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36647	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs393809	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs40622	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs420498	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs42317	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs835232	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57642200-57649400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57645800-57649800	Weak transcription	Placenta	Placenta
3	chr5:57647000-57649800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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