Variant report

Variant	rs697086
Chromosome Location	chr5:57690100-57690101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57659417..57661558-chr5:57689608..57691662,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1508920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151918	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs181748	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs244699	0.94[ASN][1000 genomes]
rs244701	0.91[ASN][1000 genomes]
rs244702	0.94[ASN][1000 genomes]
rs245458	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs245459	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2652497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2662609	0.98[ASN][1000 genomes]
rs26970	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs26971	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26972	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26973	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26974	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs26975	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs26977	0.94[ASN][1000 genomes]
rs27568	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs27724	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs27937	0.92[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs28017	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs32629	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36646	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36647	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs375523	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378828	0.92[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs393809	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs40169	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs40622	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs420498	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs42317	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs435805	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs445309	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs696190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs696191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs697136	0.97[ASN][1000 genomes]
rs697137	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs702596	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702598	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs834934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs834936	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs835232	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1032746	chr5:57675471-57701548	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv989305	chr5:57678008-57695255	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57689600-57690200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:57689600-57690400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:57689600-57690600	Enhancers	NHEK	skin
4	chr5:57690000-57690400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:57690000-57690600	Weak transcription	Aorta	Aorta

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