Variant report

Variant	rs697136
Chromosome Location	chr5:57687096-57687097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57679618..57681387-chr5:57685117..57687190,2	MCF-7	breast:
2	chr5:57684855..57687554-chr5:57691257..57692769,2	MCF-7	breast:
3	chr5:57685717..57687980-chr5:57753512..57756250,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1508920	0.98[ASN][1000 genomes]
rs151918	0.97[ASN][1000 genomes]
rs181748	0.97[ASN][1000 genomes]
rs244699	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs244701	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs244702	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs245458	1.00[ASN][1000 genomes]
rs245459	0.97[ASN][1000 genomes]
rs2652497	0.95[ASN][1000 genomes]
rs2662609	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs26970	0.90[ASN][1000 genomes]
rs26971	0.94[ASN][1000 genomes]
rs26972	0.94[ASN][1000 genomes]
rs26973	0.94[ASN][1000 genomes]
rs26974	0.97[ASN][1000 genomes]
rs26975	0.97[ASN][1000 genomes]
rs26977	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27568	0.92[ASN][1000 genomes]
rs27724	0.97[ASN][1000 genomes]
rs27937	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28017	0.97[ASN][1000 genomes]
rs32629	0.92[ASN][1000 genomes]
rs36644	0.89[EUR][1000 genomes]
rs36646	0.85[ASN][1000 genomes]
rs36647	0.86[ASN][1000 genomes]
rs375523	1.00[ASN][1000 genomes]
rs378828	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs393809	0.86[ASN][1000 genomes]
rs40169	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs40622	0.83[ASN][1000 genomes]
rs420498	0.86[ASN][1000 genomes]
rs42317	0.86[ASN][1000 genomes]
rs435805	0.94[ASN][1000 genomes]
rs445309	0.97[ASN][1000 genomes]
rs60482268	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs696190	0.98[ASN][1000 genomes]
rs696191	0.98[ASN][1000 genomes]
rs697086	0.97[ASN][1000 genomes]
rs697137	1.00[ASN][1000 genomes]
rs702596	0.98[ASN][1000 genomes]
rs702597	0.98[ASN][1000 genomes]
rs702598	0.94[ASN][1000 genomes]
rs834934	0.98[ASN][1000 genomes]
rs834936	0.98[ASN][1000 genomes]
rs835232	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1032746	chr5:57675471-57701548	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv989305	chr5:57678008-57695255	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1004243	chr5:57679002-57687169	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2518600	chr5:57679100-57687258	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv435821	chr5:57679926-57687219	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57677200-57689600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57686600-57687600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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