Variant report

Variant	rs36644
Chromosome Location	chr5:57647762-57647763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs152011	0.83[MEX][hapmap]
rs173425	0.81[JPT][hapmap]
rs2047751	0.85[AMR][1000 genomes]
rs244699	0.90[EUR][1000 genomes]
rs244701	0.88[EUR][1000 genomes]
rs244702	0.89[EUR][1000 genomes]
rs245278	0.81[JPT][hapmap]
rs245491	0.87[MEX][hapmap]
rs245494	0.87[ASW][hapmap]
rs2662609	0.88[CEU][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs26977	0.91[EUR][1000 genomes]
rs27937	0.88[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs37535	0.87[ASW][hapmap];0.87[MEX][hapmap]
rs378828	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs3846534	0.88[TSI][hapmap]
rs40169	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs697136	0.89[EUR][1000 genomes]
rs9292160	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36644	SKIV2L2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57642200-57649400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57645800-57648000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57645800-57649800	Weak transcription	Placenta	Placenta
4	chr5:57647000-57649800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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