Variant report

Variant	rs245494
Chromosome Location	chr5:57636145-57636146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs151913	0.88[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs152011	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs152012	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1651127	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs185425	0.81[ASW][hapmap];0.83[LWK][hapmap];0.96[MKK][hapmap];0.82[TSI][hapmap];0.84[YRI][hapmap]
rs245491	0.96[CEU][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs37535	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs37537	0.92[CEU][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs37538	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57635600-57637400	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links