Variant report

Variant	rs151913
Chromosome Location	chr5:57607955-57607956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs151866	0.81[CHB][hapmap]
rs151867	0.81[CHB][hapmap]
rs152011	0.88[CEU][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs152012	0.90[EUR][1000 genomes]
rs1651127	0.88[EUR][1000 genomes]
rs185425	0.81[LWK][hapmap];0.81[YRI][hapmap]
rs245491	0.92[CEU][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs245494	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs37519	0.84[JPT][hapmap]
rs37520	0.82[JPT][hapmap]
rs37521	0.84[JPT][hapmap]
rs37535	0.96[CEU][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs37537	0.96[CEU][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs37538	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs43217	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs151913	GAPT	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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