Variant report

Variant	rs185425
Chromosome Location	chr5:57630221-57630222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs151913	0.81[LWK][hapmap];0.81[YRI][hapmap]
rs152011	0.84[TSI][hapmap]
rs1651127	0.87[AFR][1000 genomes]
rs245491	0.82[TSI][hapmap]
rs245494	0.81[ASW][hapmap];0.83[LWK][hapmap];0.96[MKK][hapmap];0.82[TSI][hapmap];0.84[YRI][hapmap]
rs37535	0.81[ASW][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57627200-57631600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57627200-57634000	Weak transcription	Aorta	Aorta
3	chr5:57629800-57630400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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