Variant report

Variant	rs834936
Chromosome Location	chr5:57707720-57707721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1508920	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151918	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs181748	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs244699	0.95[ASN][1000 genomes]
rs244701	0.92[ASN][1000 genomes]
rs244702	0.95[ASN][1000 genomes]
rs245458	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245459	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2652497	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2662609	1.00[ASN][1000 genomes]
rs26970	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26971	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs26972	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs26973	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs26974	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26975	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26977	0.95[ASN][1000 genomes]
rs27568	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs27724	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27937	0.95[ASN][1000 genomes]
rs28017	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs32629	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36646	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36647	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs375523	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs378828	0.95[ASN][1000 genomes]
rs393809	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs40169	0.95[ASN][1000 genomes]
rs40622	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs420498	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs42317	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs435805	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs445309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs696190	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs696191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697086	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs697136	0.98[ASN][1000 genomes]
rs697137	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702597	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs834934	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835232	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57699600-57708200	Enhancers	HMEC	breast
2	chr5:57700000-57708000	Enhancers	NHEK	skin
3	chr5:57703800-57708200	Enhancers	A549	lung
4	chr5:57705400-57708200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:57705800-57708000	Enhancers	HSMM	muscle
6	chr5:57705800-57708200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:57706000-57707800	Enhancers	Osteobl	bone
8	chr5:57706000-57708200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:57706000-57708400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:57706000-57710000	Weak transcription	Fetal Brain Male	brain
11	chr5:57706400-57709000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr5:57706800-57708200	Enhancers	HSMMtube	muscle
13	chr5:57706800-57708400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:57707200-57708000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:57707200-57708600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:57707600-57707800	Enhancers	Esophagus	oesophagus

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