Variant report

Variant	rs1508920
Chromosome Location	chr5:57709715-57709716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57708135..57711120-chr5:57747586..57749744,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs151918	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs181748	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs244699	0.95[ASN][1000 genomes]
rs244701	0.92[ASN][1000 genomes]
rs244702	0.95[ASN][1000 genomes]
rs245458	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245459	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2652497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2662609	1.00[ASN][1000 genomes]
rs26970	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26971	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs26972	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs26973	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs26974	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26975	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26977	0.95[ASN][1000 genomes]
rs27568	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs27724	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27937	0.95[ASN][1000 genomes]
rs28017	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs32629	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36646	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36647	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs375523	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs378828	0.95[ASN][1000 genomes]
rs393809	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs40169	0.95[ASN][1000 genomes]
rs40622	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs420498	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs42317	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs435805	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs445309	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs696190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs696191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs697136	0.98[ASN][1000 genomes]
rs697137	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702596	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702598	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs834934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs834936	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835232	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57706000-57710000	Weak transcription	Fetal Brain Male	brain
2	chr5:57708200-57710800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57709400-57712200	Enhancers	Brain Germinal Matrix	brain

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